Consensus-generating tool from aligned multi-FASTA files.
To download OAWK in a Linux system, please run:
git clone https://github.com/cobilab/OAWK.git cd src chmod +x *.sh
To generate a consensus the following command should be executed:
python3 OAWK.py -i input.fa -v name_virus -k values_of_k -b value_of_b
To evaluate the consensus generated for one file, given a reference, please type:
./OAWK_evaluation.sh --reconstructed reconstructed.fa --reference reference.fa --output results
On using this software/method please cite:
- pending
For any issue let us know at issues link.
GPL v3.
For more information:
http://www.gnu.org/licenses/gpl-3.0.html