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@churchmanlab

Churchman Lab

Pinned

  1. genewalk genewalk Public

    GeneWalk identifies relevant gene functions for a biological context using network representation learning

    Python 128 15

  2. splicing_order splicing_order Public

    Jupyter Notebook 3

  3. mtFiberseq mtFiberseq Public

    Shell

  4. mitoRNA_kinetics mitoRNA_kinetics Public

    Mitochondrial RNA kinetics

    Jupyter Notebook

  5. human-mitoribosome-profiling human-mitoribosome-profiling Public

    R 3 1

  6. rna_flow rna_flow Public

    Jupyter Notebook 1

Repositories

Showing 10 of 13 repositories
  • genewalk Public

    GeneWalk identifies relevant gene functions for a biological context using network representation learning

    churchmanlab/genewalk’s past year of commit activity
    Python 128 BSD-2-Clause 15 0 0 Updated Aug 1, 2024
  • human-mitoribosome-profiling Public
    churchmanlab/human-mitoribosome-profiling’s past year of commit activity
    R 3 1 0 0 Updated Jul 16, 2024
  • rna_flow Public
    churchmanlab/rna_flow’s past year of commit activity
    Jupyter Notebook 1 BSD-2-Clause 0 0 0 Updated Jul 7, 2024
  • mitoRNA_kinetics Public

    Mitochondrial RNA kinetics

    churchmanlab/mitoRNA_kinetics’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Jan 31, 2024
  • mtFiberseq Public
    churchmanlab/mtFiberseq’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 14, 2023
  • splicing_order Public
    churchmanlab/splicing_order’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated May 16, 2023
  • SPT5_erythropoiesis Public
    churchmanlab/SPT5_erythropoiesis’s past year of commit activity
    R 0 0 0 0 Updated Feb 24, 2023
  • Yeast_NETseq_Screen Public

    Dynamics of transcription elongation are finely-tuned by dozens of regulatory factors

    churchmanlab/Yeast_NETseq_Screen’s past year of commit activity
    Perl 0 1 0 0 Updated Mar 20, 2022
  • nano-COP Public

    Nanopore analysis of CO-transcriptional processing exposes the nascent transcriptome via direct long-read RNA-seq

    churchmanlab/nano-COP’s past year of commit activity
    Jupyter Notebook 8 3 0 0 Updated Jan 29, 2021
  • MiMB2019NETseq Public

    NETseq alignment pipeline as described in Martell et al, Methods in Molecular Biology (in press)

    churchmanlab/MiMB2019NETseq’s past year of commit activity
    Shell 2 MIT 1 0 0 Updated Jan 3, 2021
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