Support delta-encoded AP in sorted CRAM files #1131
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| name: main | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| java: [ '8', '11', '17', '21'] | |
| name: Java ${{ matrix.java }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: ${{ matrix.java }} | |
| distribution: 'temurin' | |
| architecture: x64 | |
| - name: Cache m2 repository | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.m2 | |
| key: ${{ runner.os }}-m2-${{ hashFiles('**/project.clj') }} | |
| restore-keys: | | |
| ${{ runner.os }}-m2- | |
| - name: Install dependencies | |
| run: lein deps | |
| - name: Run lein check | |
| if: matrix.java == '11' | |
| run: >- | |
| ! lein update-in :global-vars assoc '*unchecked-math*' :warn-on-boxed -- check 2>&1 > /dev/null | | |
| grep cljam | | |
| sed -E 's/^Reflection warning, ([^:]+):([0-9]+):([0-9]+) - (.*)$/::warning file=\1,line=\2,col=\3::\4/;s/^Boxed math warning, ([^:]+):([0-9]+):([0-9]+) - (.*)$/::warning file=\1,line=\2,col=\3::\4/' | | |
| grep '::warning' | |
| - name: Run tests | |
| run: | | |
| lein with-profile +dev:+1.8:+1.9 test | |
| deploy: | |
| needs: [build] | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/master' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '8' | |
| distribution: 'temurin' | |
| architecture: x64 | |
| - name: Deploy | |
| env: | |
| CLOJARS_USERNAME: ${{ secrets.CLOJARS_USERNAME }} | |
| CLOJARS_PASSWORD: ${{ secrets.CLOJARS_PASSWORD }} | |
| run: ./deploy-snapshot.sh |