chore: promote staging to prod #273
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* Add terraform code * Stuff * Additional cleanup * Add dev and remove old modules * symlink * fix symlink * Checkpoint * New config file * several changes * Update .happy/terraform/modules/ecs-stack/main.tf Co-authored-by: Andrew Tolopko <atolopko-czi@users.noreply.github.com> * Change dp to explorer * Update .happy/terraform/envs/dev/main.tf Co-authored-by: Andrew Tolopko <atolopko-czi@users.noreply.github.com>
Bumps [cross-fetch](https://github.com/lquixada/cross-fetch) from 3.1.4 to 3.1.5. - [Release notes](https://github.com/lquixada/cross-fetch/releases) - [Commits](lquixada/cross-fetch@v3.1.4...v3.1.5) --- updated-dependencies: - dependency-name: cross-fetch dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
Bumps [simple-get](https://github.com/feross/simple-get) from 3.1.0 to 3.1.1. - [Release notes](https://github.com/feross/simple-get/releases) - [Commits](feross/simple-get@v3.1.0...v3.1.1) --- updated-dependencies: - dependency-name: simple-get dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
…225) Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.1 to 1.14.8. - [Release notes](https://github.com/follow-redirects/follow-redirects/releases) - [Commits](follow-redirects/follow-redirects@v1.14.1...v1.14.8) --- updated-dependencies: - dependency-name: follow-redirects dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
* Switch to gunicorn * cleanup
Bumps [nanoid](https://github.com/ai/nanoid) from 3.1.23 to 3.3.1. - [Release notes](https://github.com/ai/nanoid/releases) - [Changelog](https://github.com/ai/nanoid/blob/main/CHANGELOG.md) - [Commits](ai/nanoid@3.1.23...3.3.1) --- updated-dependencies: - dependency-name: nanoid dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [axios](https://github.com/axios/axios) from 0.21.1 to 0.21.4. - [Release notes](https://github.com/axios/axios/releases) - [Changelog](https://github.com/axios/axios/blob/master/CHANGELOG.md) - [Commits](axios/axios@v0.21.1...v0.21.4) --- updated-dependencies: - dependency-name: axios dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* staging * Disable migrations
* Diffex perf * Diffex algo tweaks * algo work and shift be gone * revert xarray change * unrevert fine change * tdb bug * remove debugging print * add note about tiledb workaround * remove obsolete configuration hooks for diffexp parallelism * lint * replace deprecated np.where use with recommended nonzero() * simplify X slicing * remove tiledb 0.13.1 work-arounds * revert tiledb.Ctx handling to correctly use configuration subsystem * clean up tiledb config params * smaller size for default python tiledb query buffer * try even smaller default python buffer * 1GB default tiledb python buffer * Add high performance diffex routes (#244) * first cut at new binary diffex routes * lint * clean up benchmark * update diffex benchmark * lower memory footprint by using incremental query for diffex * update to tiledb 0.13.3 * fix misleading comment * add additional unit tests for new route * improve stats * incremental mean and variance calculation to reduce memory footprint * LINT! * Infra changes * Replace modules with symlinks Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com> Co-authored-by: Emanuele Bezzi <ebezzi@chanzuckerberg.com>
* ci/cd for ecs * tests * Comment slack failures * Install happy client * Try GHA action * test * Refactor * Changes * fixes
* chore: clean up documentation and fix broken links. * Update README.md Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com> * Fix contributing guide link. Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com> Co-authored-by: Emanuele Bezzi <ebezzi@chanzuckerberg.com>
Bumps [semver-regex](https://github.com/sindresorhus/semver-regex) from 3.1.2 to 3.1.3. - [Release notes](https://github.com/sindresorhus/semver-regex/releases) - [Commits](https://github.com/sindresorhus/semver-regex/commits) --- updated-dependencies: - dependency-name: semver-regex dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
chore: bump happy to 0.19.1
* Remove unused build steps and comments * Remove gitignore * Remove more stuff * remove more GHA workflows
Codecov Report
@@ Coverage Diff @@
## prod #273 +/- ##
==========================================
- Coverage 76.47% 76.12% -0.35%
==========================================
Files 92 90 -2
Lines 6758 6660 -98
==========================================
- Hits 5168 5070 -98
Misses 1590 1590
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Bento007
approved these changes
May 19, 2022
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Changes
6a75d87 2022-05-17: "fix: 270 analytics expand events (fix: 270 analytics expand events #271)" (Timmy Huang)
dbbbb5e 2022-05-17: "chore: beanstalk cleanup (chore: beanstalk cleanup #268)" (Emanuele Bezzi)
b7d16b8 2022-05-16: "chore: stage -> staging in the config generation file (chore: stage -> staging in the config generation file #266)" (Emanuele Bezzi)
be75ba1 2022-05-16: "fix(analytics): Analytics: Diff exp payload #262 adds event payloads (fix(analytics): #262 adds event payloads #264)" (Timmy Huang)
6af6511 2022-05-16: "Merge pull request chore: bump happy to 0.19.1 #263 from chanzuckerberg/ebezzi/happy-0-19-1" (Emanuele Bezzi)
615ce76 2022-05-14: "chore(deps): bump semver-regex from 3.1.2 to 3.1.3 in /client (chore(deps): bump semver-regex from 3.1.2 to 3.1.3 in /client #254)" (dependabot[bot])
f6c32b4 2022-05-13: "chore: clean up documentation and fix broken links. (chore: clean up documentation and fix broken links. #252)" (maniarathi)
25070e1 2022-05-13: "chore: ECS ci/cd (chore: ECS ci/cd #251)" (Emanuele Bezzi)
78f36b5 2022-05-13: "chore: set DEPLOYMENT_STAGE in Dockerfile (chore: set DEPLOYMENT_STAGE in Dockerfile #260)" (Emanuele Bezzi)
eec0310 2022-05-13: "chore: set explorer instance count to 3 (chore: set explorer instance count to 3 #259)" (Emanuele Bezzi)
1e9965a 2022-05-12: "feat: differential expression performance improvements (Differential expression performance improvements #234)" (Ben MR)
f5993b9 2022-05-11: "chore: happy terraform staging (chore: happy terraform staging #256)" (Emanuele Bezzi)
baeb431 2022-05-09: "chore: Clean up development guidelines. (chore: Clean up development guidelines. #253)" (maniarathi)
981cb3e 2022-05-06: "chore(deps): bump axios from 0.21.1 to 0.21.4 in /client (chore(deps): bump axios from 0.21.1 to 0.21.4 in /client #239)" (dependabot[bot])
561ba71 2022-05-06: "chore(deps): bump nanoid from 3.1.23 to 3.3.1 in /client (chore(deps): bump nanoid from 3.1.23 to 3.3.1 in /client #238)" (dependabot[bot])
8af586a 2022-05-06: "feat(analytics): 1631 Add analytics (feat(analytics): 1631 Add analytics #249)" (Timmy Huang)
8544eb5 2022-05-06: "chore: use gunicorn for ecs (chore: use gunicorn for ecs #250)" (Emanuele Bezzi)
0961cc9 2022-05-05: "chore(deps): bump follow-redirects from 1.14.1 to 1.14.8 in /client (chore(deps): bump follow-redirects from 1.14.1 to 1.14.8 in /client #225)" (dependabot[bot])
1838c68 2022-05-05: "chore(deps): bump simple-get from 3.1.0 to 3.1.1 in /client (chore(deps): bump simple-get from 3.1.0 to 3.1.1 in /client #221)" (dependabot[bot])
65a525d 2022-05-05: "chore(deps): bump cross-fetch from 3.1.4 to 3.1.5 in /client (chore(deps): bump cross-fetch from 3.1.4 to 3.1.5 in /client #248)" (dependabot[bot])
3b479e5 2022-05-05: "Add terraform code for happy deployments (Add terraform code for happy deployments #246)" (Emanuele Bezzi)