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Release v2024.6.18
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cgohlke committed Jun 18, 2024
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25 changes: 16 additions & 9 deletions README.rst
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Expand Up @@ -12,7 +12,7 @@ Tifffile is a Python library to
Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM,
SGI, NIHImage, ImageJ, MMStack, NDTiff, FluoView, ScanImage, SEQ, GEL,
SVS, SCN, SIS, BIF, ZIF (Zoomable Image File Format), QPTIFF (QPI, PKI), NDPI,
Philips DP, and GeoTIFF formatted files.
AVS, Philips DP, and GeoTIFF formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips,
tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.
Expand All @@ -33,7 +33,7 @@ many proprietary metadata formats.

:Author: `Christoph Gohlke <https://www.cgohlke.com>`_
:License: BSD 3-Clause
:Version: 2024.5.22
:Version: 2024.6.18
:DOI: `10.5281/zenodo.6795860 <https://doi.org/10.5281/zenodo.6795860>`_

Quickstart
Expand Down Expand Up @@ -69,25 +69,30 @@ Requirements
This revision was tested with the following requirements and dependencies
(other versions may work):

- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.9, 3.12.3, 64-bit
- `NumPy <https://pypi.org/project/numpy/>`_ 1.26.4
- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.9, 3.12.4, 64-bit
- `NumPy <https://pypi.org/project/numpy/>`_ 2.0.0
- `Imagecodecs <https://pypi.org/project/imagecodecs/>`_ 2024.1.1
(required for encoding or decoding LZW, JPEG, etc. compressed segments)
- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.8.4
- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.9.0
(required for plotting)
- `Lxml <https://pypi.org/project/lxml/>`_ 5.2.2
(required only for validating and printing XML)
- `Zarr <https://pypi.org/project/zarr/>`_ 2.18.1
- `Zarr <https://pypi.org/project/zarr/>`_ 2.18.2
(required only for opening Zarr stores)
- `Fsspec <https://pypi.org/project/fsspec/>`_ 2024.5.0
- `Fsspec <https://pypi.org/project/fsspec/>`_ 2024.6.0
(required only for opening ReferenceFileSystem files)

Revisions
---------

2024.6.18

- Pass 5086 tests.
- Ensure TiffPage.nodata is castable to dtype (breaking, #260).
- Support Argos AVS slides.

2024.5.22

- Pass 5084 tests.
- Derive TiffPages, TiffPageSeries, FileSequence, StoredShape from Sequence.
- Truncate circular IFD chain, do not raise TiffFileError (breaking).
- Deprecate access to TiffPages.pages and FileSequence.files.
Expand All @@ -96,7 +101,7 @@ Revisions
- Add iccprofile property to TiffPage and parameter to TiffWriter.write.
- Do not detect VSI as SIS format.
- Limit length of logged exception messages.
- Work around GitHub not rendering docstring examples (#254, #255).
- Fix docstring examples not correctly rendered on GitHub (#254, #255).

2024.5.10

Expand Down Expand Up @@ -363,6 +368,8 @@ References
- PerkinElmer image format.
https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx
- NDTiffStorage. https://github.com/micro-manager/NDTiffStorage
- Argos AVS File Format.
https://github.com/user-attachments/files/15580286/ARGOS.AVS.File.Format.pdf

Examples
--------
Expand Down

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