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Release v2024.7.2
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cgohlke committed Jul 3, 2024
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Expand Up @@ -9,10 +9,12 @@ Tifffile is a Python library to
(1) store NumPy arrays in TIFF (Tagged Image File Format) files, and
(2) read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM,
SGI, NIHImage, ImageJ, MMStack, NDTiff, FluoView, ScanImage, SEQ, GEL,
SVS, SCN, SIS, BIF, ZIF (Zoomable Image File Format), QPTIFF (QPI, PKI), NDPI,
AVS, Philips DP, and GeoTIFF formatted files.
Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF,
Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM,
ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage,
Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL,
Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI),
Hamamatsu NDPI, Argos AVS, and Philips DP formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips,
tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.
Expand All @@ -33,7 +35,7 @@ many proprietary metadata formats.

:Author: `Christoph Gohlke <https://www.cgohlke.com>`_
:License: BSD 3-Clause
:Version: 2024.6.18
:Version: 2024.7.2
:DOI: `10.5281/zenodo.6795860 <https://doi.org/10.5281/zenodo.6795860>`_

Quickstart
Expand Down Expand Up @@ -69,7 +71,7 @@ Requirements
This revision was tested with the following requirements and dependencies
(other versions may work):

- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.9, 3.12.4, 64-bit
- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.4, 3.13.0b3, 64-bit
- `NumPy <https://pypi.org/project/numpy/>`_ 2.0.0
- `Imagecodecs <https://pypi.org/project/imagecodecs/>`_ 2024.1.1
(required for encoding or decoding LZW, JPEG, etc. compressed segments)
Expand All @@ -79,15 +81,20 @@ This revision was tested with the following requirements and dependencies
(required only for validating and printing XML)
- `Zarr <https://pypi.org/project/zarr/>`_ 2.18.2
(required only for opening Zarr stores)
- `Fsspec <https://pypi.org/project/fsspec/>`_ 2024.6.0
- `Fsspec <https://pypi.org/project/fsspec/>`_ 2024.6.1
(required only for opening ReferenceFileSystem files)

Revisions
---------

2024.6.18
2024.7.2

- Pass 5086 tests.
- Enable memmap to create empty files with non-native byte order.
- Deprecate Python 3.9, support Python 3.13.

2024.6.18

- Ensure TiffPage.nodata is castable to dtype (breaking, #260).
- Support Argos AVS slides.

Expand Down Expand Up @@ -210,12 +217,7 @@ Notes
-----

TIFF, the Tagged Image File Format, was created by the Aldus Corporation and
Adobe Systems Incorporated. STK, LSM, FluoView, SGI, SEQ, GEL, QPTIFF, NDPI,
SCN, SVS, ZIF, BIF, and OME-TIFF, are custom extensions defined by Molecular
Devices (Universal Imaging Corporation), Carl Zeiss MicroImaging, Olympus,
Silicon Graphics International, Media Cybernetics, Molecular Dynamics,
PerkinElmer, Hamamatsu, Leica, ObjectivePathology, Roche Digital Pathology,
and the Open Microscopy Environment consortium, respectively.
Adobe Systems Incorporated.

Tifffile supports a subset of the TIFF6 specification, mainly 8, 16, 32, and
64-bit integer, 16, 32 and 64-bit float, grayscale and multi-sample images.
Expand Down

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