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  1. pytxdb pytxdb Public

    Package to create and query R's txdb-esque database with some additional features

    Python 3

  2. create a refflat for picard rnaseqme... create a refflat for picard rnaseqmetrict from txdb
    1
    library(optparse)
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    3
    option_list <- list( 
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      make_option(c("-g", "--gtf"), action="store", help="gtf file to use"),
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      make_option(c("-r", "--refflat"), action="store", help="refflat output"),
  3. parse_pileup parse_pileup Public

    Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

    Python 1

  4. video_parser video_parser Public

    parse gut slice videos frame by frame into excel with object or movement tracking

    Python 3