Releases
2.1.0
2.1.0 - Performance, security and scientific correction
Latest
Update base image to dockstore-cgpwxs:3.1.6 (from 3.0.3)
Includes, memory footprint reduction for Caveman flagging
Significant speedup in indel input generation
Parallel flagging for SNV
Fragment based SNV/Indel calling
Upgrade allele counter and brass
Reduce number of layers in final image.
Remove some legacy env vars from wrappers
Battenberg removed
Was only included to do base allele counts not complete analysis
Underlying data files are not supported for new builds or other species
Contact original authors for ongoing support
Wrapper script didn't explicitly specify sex SNP loci file (ASCAT)
no impact for GRCh37 other species/build would have used wrong sex chromosome SNPs
CaVEMan step wasn't being passed normal contamination value, scientific impact :
previously caveman.pl
default of 0.1
was applied
this will now honor the value from ASCAT (1-$rho
)
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