[Scipy] Add platform macosx-arm64

.github/actions/deploy-macosx/action.yml

@@ -24,7 +24,7 @@ runs:
           sudo rm -Rf /Library/Developer/CommandLineTools/SDKs/MacOSX10*
         fi
 
-        brew uninstall --force --ignore-dependencies gcc gcc@7 gcc@8 gcc@9 gcc@10 gcc@11 gcc@12 gcc@13 little-cms2 maven openblas r
+        brew uninstall --force --ignore-dependencies gcc gcc@7 gcc@8 gcc@9 gcc@10 gcc@11 gcc@12 gcc@13 gcc@14 little-cms2 maven openblas r
         brew install boost ccache swig autoconf-archive automake cmake libomp libtool libusb ant nasm xz pkg-config sdl2 gpg1 bison flex perl ragel binutils gradle gmp isl libmpc mpfr geoip pcre ssdeep yajl
         brew link --force libomp
 
@@ -33,31 +33,27 @@ runs:
         # brew unlink cmake
         # brew install cmake.rb
 
+        FORMULAE=()
         if [[ -n ${CI_DEPLOY_NEED_GCC:-} ]]; then
           echo Installing an older less buggy version of GCC
-          brew install gcc@10
-          brew link --overwrite gcc@10
-
+          brew install gcc@13
+          brew link --overwrite gcc@13
           echo Removing "fixed" header files that are actually broken
-          sudo rm -Rf $(find /usr/local/Cellar/gcc@10/ -iname include-fixed)
-
-          echo Fixing up some binaries to support rpath
-          sudo install_name_tool -add_rpath /usr/local/lib/gcc/10/ -add_rpath @loader_path/. -id @rpath/libgomp.1.dylib /usr/local/lib/gcc/10/libgomp.1.dylib
-          sudo install_name_tool -add_rpath /usr/local/lib/gcc/10/ -add_rpath @loader_path/. -id @rpath/libstdc++.6.dylib /usr/local/lib/gcc/10/libstdc++.6.dylib
-          sudo install_name_tool -add_rpath /usr/local/lib/gcc/10/ -add_rpath @loader_path/. -id @rpath/libgfortran.5.dylib /usr/local/lib/gcc/10/libgfortran.5.dylib
-          sudo install_name_tool -add_rpath /usr/local/lib/gcc/10/ -add_rpath @loader_path/. -id @rpath/libquadmath.0.dylib /usr/local/lib/gcc/10/libquadmath.0.dylib
-          sudo install_name_tool -add_rpath /usr/local/lib/gcc/10/ -add_rpath @loader_path/. -id @rpath/libgcc_s.1.dylib /usr/local/lib/gcc/10/libgcc_s.1.dylib
-          sudo install_name_tool -change $(otool -L /usr/local/lib/gcc/10/libgfortran.5.dylib | grep /usr/local/Cellar/gcc@10/ | cut -f1 -d ' ') @rpath/libquadmath.0.dylib /usr/local/lib/gcc/10/libgfortran.5.dylib
-          sudo install_name_tool -change /usr/local/lib/gcc/10/libgcc_s.1.dylib @rpath/libgcc_s.1.dylib /usr/local/lib/gcc/10/libgomp.1.dylib
-          sudo install_name_tool -change /usr/local/lib/gcc/10/libgcc_s.1.dylib @rpath/libgcc_s.1.dylib /usr/local/lib/gcc/10/libstdc++.6.dylib
-          sudo install_name_tool -change /usr/local/lib/gcc/10/libgcc_s.1.dylib @rpath/libgcc_s.1.dylib /usr/local/lib/gcc/10/libgfortran.5.dylib
-          sudo install_name_tool -change /usr/local/lib/gcc/10/libgcc_s.1.dylib @rpath/libgcc_s.1.dylib /usr/local/lib/gcc/10/libquadmath.0.dylib
-          otool -L /usr/local/lib/gcc/10/*.dylib
+          rm -Rf $(find /opt/homebrew/Cellar/gcc@13/ -iname include-fixed)
+          FORMULAE+="gcc@13"
         fi
 
-        sudo install_name_tool -add_rpath @loader_path/. -id @rpath/libomp.dylib `brew ls libomp|grep libomp.dylib`
-        sudo install_name_tool -add_rpath @loader_path/. -id @rpath/libSDL2-2.0.0.dylib `brew ls sdl2|grep libSDL2-2.0.0.dylib`
-        sudo install_name_tool -add_rpath @loader_path/. -id @rpath/libusb-1.0.0.dylib `brew ls libusb|grep libusb-1.0.0.dylib`
+        # Change rpath and resign all brew libraries that could be bundled in presets
+        FORMULAE+=("libomp" "sdl2" "libusb")
+        for i in $FORMULAE; do
+          for l in $(brew ls $i|grep -e ".dylib$"); do
+            if [ ! -L $l ]; then
+              install_name_tool -add_rpath @loader_path/. -id @rpath/$(basename $l) $l
+              codesign --force -s - $l
+            fi
+          done
+        done
+        otool -L $(brew ls gcc@13|grep -e ".dylib$");
 
         curl -LO https://archive.apache.org/dist/maven/maven-3/3.6.3/binaries/apache-maven-3.6.3-bin.tar.gz
         sudo tar -xzf apache-maven-3.6.3-bin.tar.gz -C /usr/local/opt
@@ -103,10 +99,12 @@ runs:
     - name: Build project
       shell: bash
       run: |
-        export LIBRARY_PATH="/usr/local/lib/gcc/10/"
-        export LD_LIBRARY_PATH="$LIBRARY_PATH"
-        export DYLD_LIBRARY_PATH="$LIBRARY_PATH"
-        export DYLD_FALLBACK_LIBRARY_PATH="$LIBRARY_PATH"
+        if [[ -n ${CI_DEPLOY_NEED_GCC:-} ]]; then
+          export LIBRARY_PATH="$(brew --prefix)/lib/gcc/13/"
+          export LD_LIBRARY_PATH="$LIBRARY_PATH"
+          export DYLD_LIBRARY_PATH="$LIBRARY_PATH"
+          export DYLD_FALLBACK_LIBRARY_PATH="$LIBRARY_PATH"
+        fi
 
         # Change default JVM on macos-14 runner
         if [[ -n ${JAVA_HOME_17_arm64:-} ]]; then

.github/workflows/scipy.yml

@@ -38,6 +38,10 @@ jobs:
     runs-on: ubuntu-20.04
     steps:
       - uses: bytedeco/javacpp-presets/.github/actions/deploy-ubuntu@actions
+  macosx-arm64:
+    runs-on: macos-14
+    steps:
+      - uses: bytedeco/javacpp-presets/.github/actions/deploy-macosx@actions
   macosx-x86_64:
     runs-on: macos-12
     steps:
@@ -51,7 +55,7 @@ jobs:
     steps:
       - uses: bytedeco/javacpp-presets/.github/actions/deploy-windows@actions
   redeploy:
-    needs: [linux-x86_64, macosx-x86_64, windows-x86_64]
+    needs: [linux-x86_64, macosx-arm64, macosx-x86_64, windows-x86_64]
 #    needs: [linux-armhf, linux-arm64, linux-ppc64le, linux-x86, linux-x86_64, macosx-x86_64, windows-x86, windows-x86_64]
     runs-on: ubuntu-20.04
     steps:

CHANGELOG.md

@@ -1,5 +1,5 @@
 
- * Introduce `macosx-arm64` builds for CPython ([pull #1511](https://github.com/bytedeco/javacpp-presets/pull/1511)), NumPy ([pull #1515](https://github.com/bytedeco/javacpp-presets/pull/1515))
+ * Introduce `macosx-arm64` builds for CPython ([pull #1511](https://github.com/bytedeco/javacpp-presets/pull/1511)), NumPy ([pull #1515](https://github.com/bytedeco/javacpp-presets/pull/1515)), SciPy ([pull #1516](https://github.com/bytedeco/javacpp-presets/pull/1516))
  * Update and fix the sample code of the presets for LLVM ([pull #1501](https://github.com/bytedeco/javacpp-presets/pull/1501))
  * Fix Vulkan GPU acceleration for FFmpeg ([pull #1497](https://github.com/bytedeco/javacpp-presets/pull/1497))
  * Build FFmpeg with zimg to enable zscale filter ([pull #1481](https://github.com/bytedeco/javacpp-presets/pull/1481))

pom.xml

@@ -1463,6 +1463,7 @@
         <module>openblas</module>
         <module>cpython</module>
         <module>numpy</module>
+        <module>scipy</module>
         <module>llvm</module>
         <module>libffi</module>
         <module>libpostal</module>

scipy/cppbuild.sh

@@ -169,7 +169,18 @@ case $PLATFORM in
         ATLAS=None CC="gcc -m64 -D__STDC_NO_THREADS__" FFLAGS="-m64 -fPIC" "$PYTHON_BIN_PATH" -m pip install . --prefix $INSTALL_PATH --config-settings=builddir=build
         strip $(find ../ -iname *.so)
         ;;
-    macosx-*)
+    macosx-arm64)
+        export F77=$(compgen -cX '!gfortran*')
+        export F90="$F77"
+        export LDFLAGS="-L/usr/lib/"
+        ATLAS=None FC="$F77" "$PYTHON_BIN_PATH" -m pip install . --prefix $INSTALL_PATH --config-settings=builddir=build
+        # need to add RPATH so it can find MKL in cache
+        for f in $(find ../ -iname *.so); do
+          install_name_tool -add_rpath @loader_path/../../../ -add_rpath @loader_path/../../../../ $f || true;
+          codesign --force -s - $f
+        done
+        ;;
+    macosx-x86_64)
         export F77="$(ls -1 /usr/local/bin/gfortran-* | head -n 1)"
         export F90="$F77"
         export LDFLAGS="-L/usr/lib/"

scipy/platform/pom.xml

@@ -60,6 +60,12 @@
       <version>${project.version}</version>
       <classifier>${javacpp.platform.linux-x86_64}</classifier>
     </dependency>
+    <dependency>
+      <groupId>${project.groupId}</groupId>
+      <artifactId>${javacpp.moduleId}</artifactId>
+      <version>${project.version}</version>
+      <classifier>${javacpp.platform.macosx-arm64}</classifier>
+    </dependency>
     <dependency>
       <groupId>${project.groupId}</groupId>
       <artifactId>${javacpp.moduleId}</artifactId>
@@ -90,7 +96,7 @@
             <configuration>
               <archive>
                 <manifestEntries>
-                  <Class-Path>${javacpp.moduleId}.jar ${javacpp.moduleId}-linux-armhf.jar ${javacpp.moduleId}-linux-arm64.jar ${javacpp.moduleId}-linux-ppc64le.jar ${javacpp.moduleId}-linux-x86.jar ${javacpp.moduleId}-linux-x86_64.jar ${javacpp.moduleId}-macosx-x86_64.jar ${javacpp.moduleId}-windows-x86.jar ${javacpp.moduleId}-windows-x86_64.jar</Class-Path>
+                  <Class-Path>${javacpp.moduleId}.jar ${javacpp.moduleId}-linux-armhf.jar ${javacpp.moduleId}-linux-arm64.jar ${javacpp.moduleId}-linux-ppc64le.jar ${javacpp.moduleId}-linux-x86.jar ${javacpp.moduleId}-linux-x86_64.jar ${javacpp.moduleId}-macosx-arm64.jar ${javacpp.moduleId}-macosx-x86_64.jar ${javacpp.moduleId}-windows-x86.jar ${javacpp.moduleId}-windows-x86_64.jar</Class-Path>
                 </manifestEntries>
               </archive>
             </configuration>
@@ -140,6 +146,7 @@
 //                      requires static org.bytedeco.${javacpp.moduleId}.linux.ppc64le;
 //                      requires static org.bytedeco.${javacpp.moduleId}.linux.x86;
                       requires static org.bytedeco.${javacpp.moduleId}.linux.x86_64;
+                      requires static org.bytedeco.${javacpp.moduleId}.macosx.arm64;
                       requires static org.bytedeco.${javacpp.moduleId}.macosx.x86_64;
 //                      requires static org.bytedeco.${javacpp.moduleId}.windows.x86;
                       requires static org.bytedeco.${javacpp.moduleId}.windows.x86_64;