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@bokulich-lab

Laboratory of Food Systems Biotechnology

FSB Lab, Institute of Food, Nutrition, and Health, D-HEST, ETH Zurich

Pinned

  1. RESCRIPt RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    Python 88 26

  2. q2-fondue q2-fondue Public

    Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

    Python 20 6

  3. q2-assembly q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    Python 4 12

  4. q2-moshpit q2-moshpit Public

    MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

    Python 3 11

Repositories

Showing 10 of 28 repositories
  • mishmash Public
    bokulich-lab/mishmash’s past year of commit activity
    Python 1 BSD-3-Clause 1 7 0 Updated Aug 23, 2024
  • RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    bokulich-lab/RESCRIPt’s past year of commit activity
    Python 88 BSD-3-Clause 26 19 1 Updated Aug 21, 2024
  • q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    bokulich-lab/q2-assembly’s past year of commit activity
    Python 4 BSD-3-Clause 12 10 5 Updated Aug 21, 2024
  • q2-kmerizer Public

    QIIME 2 plugin for generating kmers from biological sequences

    bokulich-lab/q2-kmerizer’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 20, 2024
  • DataVisualizationBook Public

    JupyterBook on data visualization for Food Scientists.

    bokulich-lab/DataVisualizationBook’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Aug 14, 2024
  • q2-viromics Public
    bokulich-lab/q2-viromics’s past year of commit activity
    Python 0 BSD-3-Clause 1 1 1 Updated Aug 9, 2024
  • FermDB Public
    bokulich-lab/FermDB’s past year of commit activity
    2 BSD-3-Clause 1 0 0 Updated Aug 5, 2024
  • q2-moshpit Public

    MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

    bokulich-lab/q2-moshpit’s past year of commit activity
    Python 3 BSD-3-Clause 11 17 8 Updated Jul 31, 2024
  • q2-amr Public
    bokulich-lab/q2-amr’s past year of commit activity
    Python 1 BSD-3-Clause 1 10 4 Updated Jul 26, 2024
  • nf-ducken Public

    Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.

    bokulich-lab/nf-ducken’s past year of commit activity
    Nextflow 3 2 44 0 Updated Jul 22, 2024
View all repositories

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