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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 19

  2. blotter blotter Public

    bedford lab research

    HTML 67 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 21

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 101 repositories
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 67 93 3 0 Updated Sep 11, 2024
  • cholera Public
    blab/cholera’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 11, 2024
  • flu-forecasting-delays Public

    Timely vaccine strain selection and genomic surveillance improves evolutionary forecast accuracy of seasonal influenza A/H3N2

    blab/flu-forecasting-delays’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 0 Updated Sep 10, 2024
  • perofsky-ili-antigenicity Public

    Seasonal flu build for analysis of antigenic evolution in ILI data

    blab/perofsky-ili-antigenicity’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 5, 2024
  • popcast Public

    Long-term forecasts for pathogen populations

    blab/popcast’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 4, 2024
  • ncov-forecasting-fit Public

    Assessing accuracy of fitness model forecasts

    blab/ncov-forecasting-fit’s past year of commit activity
    Jupyter Notebook 1 2 6 0 Updated Sep 2, 2024
  • phylo-kernel-public Public

    Code and data for: "Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences".

    blab/phylo-kernel-public’s past year of commit activity
    R 0 0 0 0 Updated Aug 30, 2024
  • cartography Public

    Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

    blab/cartography’s past year of commit activity
    HTML 4 MIT 1 3 0 Updated Aug 29, 2024
  • pathogen-embed Public

    Create reduced dimension embeddings for pathogen sequences

    blab/pathogen-embed’s past year of commit activity
    Python 1 MIT 0 6 0 Updated Aug 21, 2024
  • ncov-escape Public Forked from nextstrain/ncov

    Nextstrain build for SARS-CoV-2 to calculate immune escape of circulating viruses

    blab/ncov-escape’s past year of commit activity
    Mathematica 0 MIT 410 4 1 Updated Aug 9, 2024
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