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Variation prior
Jonas Andreas Sibbesen edited this page Jun 18, 2018
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A database of known human variation (variation prior) is available in the BayesTyper human data bundle (GRCh37 and GRCh38). The variation prior contains variants from the following studies:
| Source | Version | Filters* | Lifted | Reference |
|---|---|---|---|---|
| dbSNP | 150 | No rare SNVs | No | link |
| 1000 Genomes Project (1KG) | Phase 3 | No SNVs | No | link |
| Genome of the Netherlands Project (GoNL) | Release 6 | No SNVs | No | link |
| Genotype-Tissue Expression (GTEx) Project | GTEx Analysis V6 | No SNVs | No | link |
| GenomeDenmark (GDK) | v1.0 | No SNVs | From GRCh38 | link |
| Source | Version | Filters* | Lifted | Reference |
|---|---|---|---|---|
| dbSNP | 150 | No rare SNVs | No | link |
| 1000 Genomes Project (1KG) | Phase 3 | No SNVs | No | link |
| Genome of the Netherlands Project (GoNL) | Release 6 | No SNVs | From GRCh37 | link |
| Genotype-Tissue Expression (GTEx) Project | GTEx Analysis V6 | No SNVs | From GRCh37 | link |
| GenomeDenmark (GDK) | v1.0 | No SNVs | No | link |
*Reference and alternative alleles containing ambiguous nucleotides were removed from all variant sources.