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Snakemake pipelines for assembling and annotating bacterial reference sequences

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brefito

brefito is a helper script and set of snakemake pipelines for assembling, polishing, checking, and annotating microbial reference sequences and for predicting mutations in a microbial genome from re-sequencing data.

Documentation is on the GitHub Wiki:

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Snakemake pipelines for assembling and annotating bacterial reference sequences

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