Properly handling file outputs when multiple models are evaluated #142
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In a previous PR, we added the ability to create an ensemble of output structures by specifying multiple model files. This PR addresses issues with the handling of output files. If only a single model file is evaluated, the behavior of the application is unchanged. However, if multiple models are evaluated, structures will be written to
predictions/{model_name}where{model_name}is the base name of each model file.