[SEDONA-242] R: Update dependencies + fix failing test

[gregleleu]

What changes were proposed in this PR?

Updating dependencies in R package

How was this patch tested?

Ran R tests

Did this PR include necessary documentation updates?

• No, this PR does not affect any public API so no need to change the docs.

[gregleleu]

The R build has failed: it's not the old error -> all the tests failed because Spark did not start.
I am unable to reproduce on my computer

[jiayuasu]

@gregleleu I also don't know what happened...

[jiayuasu]

@gregleleu It is weird that the exact same CI passed on my fork: jiayuasu#1

[gregleleu]

@jiayuasu The logs were showing an issue with the jts core jars (between version 1.18.0 and 1.18.1) maybe it's an issue with resolving dependencies and/or cached versions?

Also, should I bump the dependencies to the 1.4.0 versions? Eg 1.19.0 for jts core

[jiayuasu]

@gregleleu Yes, please bump the dependencies version to the 1.4.0 version. Thanks for reminding me about the cache issue. The CI passed after I cleaned up the cache!

[gregleleu]

Bumped dependencies.

Just to be clear, the R package now loads:

• org.apache.sedona:sedona-core-3.0_2.12:1.3.1-incubating
• org.apache.sedona:sedona-sql-3.0_2.12:1.3.1-incubating
• org.apache.sedona:sedona-viz-3.0_2.12:1.3.1-incubating
• org.datasyslab:geotools-wrapper:1.3.0-27.2
• edu.ucar:cdm-core:5.4.2
• org.locationtech.jts:jts-core:1.19.0
• org.wololo:jts2geojson:0.16.1

It does not handle any of the exclusions that are in the POM.

("1.3.1-incubating" are replaced by "1.4.0-SNAPHSOT" for CICD by the overwrite mechanism included in the package through the SEDONA_JAR_FILES env variable)