Minor typo fix

.github/workflows/build_pages.yml

@@ -0,0 +1,49 @@
+name: Build pages using Doxygen
+on:
+    workflow_dispatch:
+        inputs:
+            commitmsg:
+                description: 'Commit Message'
+                required: true
+                default: 'Update documentation'
+    # pull_request:
+    #     branches:
+    #         - master
+    #     types:
+    #         - closed
+    #     paths:
+    #         - 'docs/'
+
+jobs:
+    build_pages:
+        # if: github.event.pull_request.merged == true
+        runs-on: ubuntu-latest
+        steps:
+            - name: Checkout repository
+              uses: actions/checkout@v2
+
+            - name: Install Doxygen
+              run: |
+                  cd ..
+                  wget https://github.com/doxygen/doxygen/archive/refs/tags/Release_1_8_14.tar.gz
+                  tar -xzf Release_1_8_14.tar.gz
+                  cd doxygen-Release_1_8_14
+                  mkdir build
+                  cd build
+                  cmake -G "Unix Makefiles" ..
+                  make
+                  sudo make install
+                  cd ../../ivar
+              shell: bash
+
+            - name: Build pages
+              run: doxygen Doxyfile
+              shell: bash
+
+            - name: Commit to changes to branch
+              run: |
+                  git config --global user.name '${{ github.actor }}'
+                  git config --global user.email '${{ github.actor }}@users.noreply.github.com'
+                  git remote set-url origin https://x-access-token:${{ secrets.GITHUB_TOKEN }}@github.com/${{ github.repository }}
+                  git commit -am "${{ github.event.inputs.commitmsg }}"
+                  git push

Doxyfile

@@ -58,7 +58,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = /Users/karthik/Documents/code/ivar/docs
+OUTPUT_DIRECTORY       = docs/
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and

docs/MANUAL.md

@@ -173,7 +173,7 @@ Usage: ivar filtervariants -p <prefix> replicate-one.tsv replicate-two.tsv ... O
 Input: Variant tsv files for each replicate/sample
 
 Input Options    Description
-           -t    Minimum fration of files required to contain the same variant. Specify value within [0,1]. (Default: 1)
+           -t    Minimum fraction of files required to contain the same variant. Specify value within [0,1]. (Default: 1)
            -f    A text file with one variant file per line.
 
 Output Options   Description