explicitly calling CODECOV_TOKEN #21
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| on: | ||
| push: | ||
| branches: [main, master, mongo_upsert] | ||
| pull_request: | ||
| branches: [main, master, mongo_upsert] | ||
| name: test-coverage | ||
| jobs: | ||
| test-coverage: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - name: Get runner IP | ||
| run: echo "RUNNER_IP=$(curl ifconfig.me)" >> $GITHUB_ENV | ||
| shell: bash | ||
| - name: Whitelist IP | ||
| env: | ||
| MONGO_API_PUBLIC: ${{secrets.MONGO_API_PUBLIC}} | ||
| MONGO_API_PRIVATE: ${{secrets.MONGO_API_PRIVATE}} | ||
| MONGODB_PROJECT_ID: ${{secrets.MONGODB_PROJECT_ID}} | ||
| run: | | ||
| curl --location "https://cloud.mongodb.com/api/atlas/v1.0/groups/$MONGODB_PROJECT_ID/accessList" \ | ||
| --digest -u "$MONGO_API_PUBLIC:$MONGO_API_PRIVATE" \ | ||
| --header "Content-Type: application/json" \ | ||
| --data '[ | ||
| { | ||
| "ipAddress": "'$RUNNER_IP'/32", | ||
| "comment": "Added via GitHub db-update action" | ||
| } | ||
| ]' | ||
| shell: bash | ||
| - uses: actions/checkout@v3 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::covr | ||
| needs: coverage | ||
| - name: Test coverage | ||
| env: | ||
| MONGODB_URL_DEV: ${{secrets.MONGODB_URL_DEV}} | ||
| CODECOV_TOKEN: ${{secretrs.CODECOV_TOKEN}} | ||
|
Check failure on line 51 in .github/workflows/test-coverage.yaml
|
||
| run: | | ||
| install.packages('remotes') | ||
| remotes::install_github("allometric/allometric") | ||
| covr::codecov( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"), | ||
| token = Sys.getenv("CODECOV_TOKEN") | ||
| ) | ||
| shell: Rscript {0} | ||
| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| ## -------------------------------------------------------------------- | ||
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package | ||
| - name: Remove IP | ||
| env: | ||
| MONGO_API_PUBLIC: ${{secrets.MONGO_API_PUBLIC}} | ||
| MONGO_API_PRIVATE: ${{secrets.MONGO_API_PRIVATE}} | ||
| MONGODB_PROJECT_ID: ${{secrets.MONGODB_PROJECT_ID}} | ||
| run: | | ||
| curl --request DELETE \ | ||
| --location "https://cloud.mongodb.com/api/atlas/v1.0/groups/$MONGODB_PROJECT_ID/accessList/${RUNNER_IP}%2F32" \ | ||
| --digest -u "$MONGO_API_PUBLIC:$MONGO_API_PRIVATE" | ||
| shell: bash | ||
