v1.1.1

• remove pysam as requirement

sha256:
554eb180c6f099b10de2bc16bf9cc10d24db22b530f92dc4ebd07d521a0c0cf7

v1.1.0

• Made compatible with both python 2 and 3
• Added Conda installation with all dependecies
• Command changed from python ./src/isafe.py [Options] to isafe [Options]

v1.0.7

• Fix bug for reading indexed BCF files
• Raise error in create_rolling_indices() in isafeclass.py when total number of variants is smaller than --window
• Raise error when --window is smaller than --MinRegionSize-ps
• Raise error when --window is smaller than --step
• Print version (-v, --version)

v1.0.6

Fixed bug with numerical sample names

v1.0.5

If the ancestral allele file (--AA) is not available the program raises a warning and assumes reference allele (REF) is ancestral allele.

v1.0.4

Raise error for inconsistent ploidy, non-biallelic, and empty region.

v1.0.3

Handling male (haploid) samples for chromosome X.

v1.0.2

Track execution progress and fixing minor bugs.

v1.0.1

Keeps not SNPs (indels, MNPs, and etc) as long as they have only one ALT (binary alleles).

v1.0

v1.0