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genomics-tools

The projects in this repository are focused around the Google Genomics API.

  • client-java provides a command line interface for API queries, and demonstrates how a more complex Java client might be written.

  • client-python provides an example web interface that depends on API queries, and demonstrates how a more complex Python client might be written. It uses Google App Engine to deploy.

  • mapreduce-python uses the MapReduce Python feature of Google App Engine to do complex calculations over API data.

  • readstore-local-java implements the Genomics API locally, reading its data from a local BAM file.

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