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I tried following the steps for replicating your benchmarks. The phrasing about otherwise liberal use of numpy and pandas didn't make it clear those were needed until the errors from running step 2. I suppose it was a serious comment for those two packages to be listed under "requirements." Once those were installed, the next error message was needing to install YAML, which I researched and installed but didn't see this package as a requirement. (Maybe it was understood it would be with Python, already...?) Step 2 ran until then, the next error message which said there was not an output_path designated and I am now researching how to create that in the script. I know your article said your steps could be repeated by someone without a deep knowledge of medicine or data analytics...I would like to know what I missed so that it has caused me to see so many errors -- just in Step 2. Any help so greatly appreciated.
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I tried following the steps for replicating your benchmarks. The phrasing about otherwise liberal use of numpy and pandas didn't make it clear those were needed until the errors from running step 2. I suppose it was a serious comment for those two packages to be listed under "requirements." Once those were installed, the next error message was needing to install YAML, which I researched and installed but didn't see this package as a requirement. (Maybe it was understood it would be with Python, already...?) Step 2 ran until then, the next error message which said there was not an output_path designated and I am now researching how to create that in the script. I know your article said your steps could be repeated by someone without a deep knowledge of medicine or data analytics...I would like to know what I missed so that it has caused me to see so many errors -- just in Step 2. Any help so greatly appreciated.
