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@WEHIGenomicsRnD

WEHI Genomics R&D

Research & Development Team, Advanced Genomics Facility, WEHI, Parkville

Popular repositories

  1. qc-pipe qc-pipe Public

    Multi-purpose pipeline for generating QC metrics from sequencing data

    Python 2

  2. nanopore-transfer-automation nanopore-transfer-automation Public

    Performs archiving and transfer of Nanopore sequencing data

    Python 2 1

  3. G000204_duplex G000204_duplex Public

    workflowR analysis code for rare mutation duplex sequencing project (G000204)

    R

  4. duplex-seq-pipeline duplex-seq-pipeline Public

    Pipeline to process duplex sequencing data.

    Python

  5. somatic-amplicon-pipe somatic-amplicon-pipe Public

    Snakemake pipeline for calling somatic variants from amplicon data using pisces

    Python

  6. BioNix-qc-pipe BioNix-qc-pipe Public

    Forked from victorwkb/BioNix-qc-pipe

    BioNix translation of WEHIGenomicsRnd/qc-pipe

    Nix

Repositories

Showing 10 of 12 repositories
  • nanopore-demux-count Public

    Demultiplex reads and count sequences of interest from Nanopore data

    WEHIGenomicsRnD/nanopore-demux-count’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 22, 2024
  • ont-basecalling-demultiplexing Public Forked from catg-umag/ont-basecalling-demultiplexing

    Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado

    WEHIGenomicsRnD/ont-basecalling-demultiplexing’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Aug 19, 2024
  • celseq-sample-sheet-generator Public

    A web app for generating sample sheets from plate designs and integrating FACS data

    WEHIGenomicsRnD/celseq-sample-sheet-generator’s past year of commit activity
    R 0 1 1 1 Updated Jul 30, 2024
  • qualfilter Public

    Quality filtering on paired reads

    WEHIGenomicsRnD/qualfilter’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated May 10, 2024
  • Manuscript_Sample-Multiplexing-Oligo-Comparison Public

    Manuscript: A Risk-reward Examination of Sample Multiplexing Reagents for Single Cell RNA-Seq

    WEHIGenomicsRnD/Manuscript_Sample-Multiplexing-Oligo-Comparison’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated May 7, 2024
  • DiB_fixed_WBC_scRNAseq Public

    Code for manuscript: A Dataset Examining Technical Factors on Fixed White Blood Cell Single-Cell RNA-Seq

    WEHIGenomicsRnD/DiB_fixed_WBC_scRNAseq’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated May 6, 2024
  • nanopore-transfer-automation Public

    Performs archiving and transfer of Nanopore sequencing data

    WEHIGenomicsRnD/nanopore-transfer-automation’s past year of commit activity
    Python 2 MIT 1 0 0 Updated May 5, 2024
  • G000204_duplex Public

    workflowR analysis code for rare mutation duplex sequencing project (G000204)

    WEHIGenomicsRnD/G000204_duplex’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated Aug 23, 2023
  • qc-pipe Public

    Multi-purpose pipeline for generating QC metrics from sequencing data

    WEHIGenomicsRnD/qc-pipe’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jun 13, 2023
  • duplex-seq-pipeline Public

    Pipeline to process duplex sequencing data.

    WEHIGenomicsRnD/duplex-seq-pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 24, 2023
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