A featherweight package for indexing biological sequence files and extracting subsequences.
The package consists of three tools, described below.
sindex
Generates an .hsi index for a FASTA-formatted biological sequence file.
sstat
Outputs metadata about an indexed sequence file, including number of sequences, total residues, and per-sequence residue counts.
sfetch
Extracts a (sub)sequence from an indexed file.
We use CMake, so the usual incantations will work...
cmake .
make
Executables will end up in the build/ directory.