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Update run_on_sumner.md
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@angarb
angarb authored Dec 16, 2021
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Expand Up @@ -76,7 +76,7 @@ Each rMATS comparison must be specified with a comparison name as well as the `s

This config file will be specific to your user and analysis. **You do not need to edit the pipeline code to configure the pipeline**. Descriptions of all possible parameters and their default values can be found [here](usage.md#all-available-parameters) and [here](https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/03c977a4a5b386a1ea31c8aae78592432e38f3a2/nextflow.config).

To create your own custom config (to specify your input parameters) you can copy and edit this [example config](https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/6ff6a5d3a629b2a9923f99c8266f7120409f4371/NF_splicing_pipeline.config) file.
To create your own custom config (to specify your input parameters) you can copy and edit this [example config](https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/d5ef6327fd3773484ecd1f0cdd593531e47cff39/NF_splicing_pipeline.config) file.

**VERY IMPORTANT NOTES***

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