Adds errorStrategy as a parameter; Sets default to terminate

TheJacksonLaboratory · Mar 3, 2022 · 2341840 · 2341840
1 parent b93c1f7
commit 2341840
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/conf/executors/google.config b/conf/executors/google.config
@@ -13,6 +13,7 @@ executor {
 }
 
 params {
+    errorStrategy = 'terminate'
     // Max resources
     max_memory     = 100.GB
     max_cpus       = 16
@@ -24,7 +25,7 @@ params {
 
 process {
     maxRetries = params.max_retries
-    errorStrategy = { task.attempt == process.maxRetries ? 'ignore' : task.exitStatus in [3,9,10,14,143,137,104,134,139] ? 'retry' : 'ignore' }
+    errorStrategy = { task.attempt == process.maxRetries ?  params.errorStrategy : task.exitStatus in [3,9,10,14,143,137,104,134,139] ? 'retry' : params.errorStrategy }
     container  = 'gcr.io/nextflow-250616/splicing-pipelines-nf:gawk'
     withName: 'get_accession' {
         disk = "50 GB"