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A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)

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StuntsPT/pyRona

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pyRona

A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)

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pyRona manual

pyRona is not yet fully documented, but you can find the manual here.

Baypass_workflow.R

If you came here looking for a way to automate the BayPass analysis, you should be especially interested in it's manual section. You can find the script here.

LFMM and LFMM2 helper scripts

If you came here looking for a way to automate LFMM/LFMM2 analysws, you should be especially interested in it's manual section. You can find the scripts for both LFMM and LFMM2 here.

Installation

Installing pyRona can be as simple as typing pip3 install pyRona from the command line. For more information, and platform specific instructions, please consult the relevant manual section.

Citation

If you use pyRona please cite our pre-print: New insights on adaptation and population structure of cork oak using genotyping by sequencing paper: New insights into adaptation and population structure of cork oak using genotyping by sequencing

License

pyRona is licensed under the GNU GPLv3.

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A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)

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