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@RamanLab

Raman Lab, IIT Madras

Computational Systems Biology Lab @ IIT Madras

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  1. FastSL FastSL Public

    A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

    MATLAB 7 6

  2. metquest metquest Public

    Forked from aarthi31/metquest-1

    Enumerating biosynthetic pathways in metabolic networks

    Jupyter Notebook 11 6

  3. ReactionMiner ReactionMiner Public

    Tool to predict (bio)chemical reactions using graph mining.

    C++ 21 10

  4. cobratoolbox cobratoolbox Public

    Forked from opencobra/cobratoolbox

    The COnstraint-Based Reconstruction and Analysis Toolbox

    MATLAB

  5. FastSL-py FastSL-py Public

    Python implementation of FastSL

    Python 1

Repositories

Showing 10 of 46 repositories
  • fbc_curation_matlab Public

    fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.

    RamanLab/fbc_curation_matlab’s past year of commit activity
    MATLAB 2 LGPL-3.0 2 1 0 Updated Aug 29, 2024
  • Neobacillus Public

    Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus

    RamanLab/Neobacillus’s past year of commit activity
    0 0 0 0 Updated Aug 24, 2024
  • phoenix-novel-species Public
    RamanLab/phoenix-novel-species’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 21, 2024
  • NonLinearAdaptation Public

    This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfect Adaptation]{Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics'

    RamanLab/NonLinearAdaptation’s past year of commit activity
    MATLAB 1 0 0 0 Updated May 29, 2024
  • ISS_Enterobacter Public
    RamanLab/ISS_Enterobacter’s past year of commit activity
    Python 0 0 0 0 Updated May 16, 2024
  • Panera Public

    MATLAB repository to construct pan-genus metabolic models (PGMM)

    RamanLab/Panera’s past year of commit activity
    MATLAB 0 0 0 0 Updated May 7, 2024
  • DNA-Computing-for-the-Subset-Sum-Problem Public Forked from ankita8572/DNA-Computing-for-the-Subset-Sum-Problem

    This repository contains the code I wrote for my undergraduate research project on 'DNA-based computing for the Subset Product Problem', done at IIT Madras.

    RamanLab/DNA-Computing-for-the-Subset-Sum-Problem’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated May 6, 2024
  • minRerouting Public

    Package to understand the compensatory mechanisms performing similar metabolic functions through analysis of Synthetic Lethals

    RamanLab/minRerouting’s past year of commit activity
    Jupyter Notebook 1 1 7 0 Updated Mar 19, 2024
  • minMicrobiome Public

    Code for generation of Minimal Microbiomes using a constraint-based approach

    RamanLab/minMicrobiome’s past year of commit activity
    MATLAB 3 MIT 1 0 0 Updated Dec 12, 2023
  • metquest2 Public Forked from dinesh-kumar-k-b/metquest2.0

    Enumerating biosynthetic pathways in metabolic networks

    RamanLab/metquest2’s past year of commit activity
    Jupyter Notebook 8 GPL-2.0 8 0 1 Updated Sep 6, 2023
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