GitHub - RJEGR/infovis: Dropping here some scripts in python and chunks in R than are useful for processing and visualizing data in bioinformatics

RJEGR / infovis Public

Notifications You must be signed in to change notification settings
Fork 0
Star 2

Dropping here some scripts in python and chunks in R than are useful for processing and visualizing data in bioinformatics

2 stars 0 forks Branches Tags Activity

Star

Notifications

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 98 Commits
.DS_Store		.DS_Store
.Rapp.history		.Rapp.history
.Rhistory		.Rhistory
.gitignore		.gitignore
AM-inmobiliaria.R		AM-inmobiliaria.R
Benchmarking_mothur.md		Benchmarking_mothur.md
Christmas_tree.R		Christmas_tree.R
EDA-feature-tax-loberas.R		EDA-feature-tax-loberas.R
EDA_DEGS_oktopus.R		EDA_DEGS_oktopus.R
EDA_dataVis.html		EDA_dataVis.html
EDA_dataVis.md		EDA_dataVis.md
EDA_dataVis.nb.html		EDA_dataVis.nb.html
EDA_dataVis.pdf		EDA_dataVis.pdf
GOseqPlot.R		GOseqPlot.R
NOG.annotations.tsv		NOG.annotations.tsv
Profiling.R		Profiling.R
Profiling_oyster_set.R		Profiling_oyster_set.R
Rintroduction.Rmd		Rintroduction.Rmd
Rintroduction.html		Rintroduction.html
Shrimp_pycrust.R		Shrimp_pycrust.R
TALLER_LOICZ_2021_1.R		TALLER_LOICZ_2021_1.R
WGCNA_omica.R		WGCNA_omica.R
adjacency_WGCNA.R		adjacency_WGCNA.R
aligment_hive_plots.R		aligment_hive_plots.R
annotation.R		annotation.R
annotation_omica.R		annotation_omica.R
area_plot.R		area_plot.R
blast2go_cli.md		blast2go_cli.md
blast_hits_plot.R		blast_hits_plot.R
blockwiseModules_oktopus.R		blockwiseModules_oktopus.R
boostrap_taxonomy.md		boostrap_taxonomy.md
busqueda_raices_R.R		busqueda_raices_R.R
busqueda_raices_metodo_biseccion.R		busqueda_raices_metodo_biseccion.R
busqueda_raices_metodo_newton-raphson.R		busqueda_raices_metodo_newton-raphson.R
clase_1_dataSci_January_2021.R		clase_1_dataSci_January_2021.R
clase_1_guia_january_2021.R		clase_1_guia_january_2021.R
codigo_ayerim.R		codigo_ayerim.R
count_table_length_ajus_gen_level_filtered.R		count_table_length_ajus_gen_level_filtered.R
dashboard.Rmd		dashboard.Rmd
dashboard.html		dashboard.html
dataExp_WGCNA_peptide.R		dataExp_WGCNA_peptide.R
enrichment_DEGS_oktopus.R		enrichment_DEGS_oktopus.R
euphaside_datavis.R		euphaside_datavis.R
exploratory_annot_oktopus.R		exploratory_annot_oktopus.R
fastq2fasta.py		fastq2fasta.py
fastspar_network_vis.R		fastspar_network_vis.R
ggtree.R		ggtree.R
goSim.R		goSim.R
length_seqs.py		length_seqs.py
log2_mean_filtering_WGCNA.R		log2_mean_filtering_WGCNA.R
mapa_loberas.R		mapa_loberas.R
marmap_gom.R		marmap_gom.R
network_wTO_loberas.R		network_wTO_loberas.R
neuropep.R		neuropep.R
nutrientes_perfiles_2021.R		nutrientes_perfiles_2021.R
plot_cluster.R		plot_cluster.R
pubmed_trends_terms.R		pubmed_trends_terms.R
qualMaxEEplot.R		qualMaxEEplot.R
rarefaction_loberas.R		rarefaction_loberas.R
removing_adapters.md		removing_adapters.md
rpkm_vs_cpm.R		rpkm_vs_cpm.R
rsem-plot-model.R		rsem-plot-model.R
rsem-visualization.sh		rsem-visualization.sh
sft_WGCNA.R		sft_WGCNA.R
single_rsem_sample_analysis.md		single_rsem_sample_analysis.md
spiec_easi_loberas.R		spiec_easi_loberas.R
subsample.py		subsample.py
subsample_fq.py		subsample_fq.py
tarea_final_qPCR.R		tarea_final_qPCR.R
upsetR_oktopus.R		upsetR_oktopus.R
validacion_genes_ref.R		validacion_genes_ref.R
wTO_complete.R		wTO_complete.R
wTO_dataviz_lab_oktopus.R		wTO_dataviz_lab_oktopus.R
wTO_dataviz_oktopus.R		wTO_dataviz_oktopus.R
wTO_metagenomics_shrimp.R		wTO_metagenomics_shrimp.R
wTO_per_tissue_stage_oktopus.R		wTO_per_tissue_stage_oktopus.R
weigth_pval_ihw_oktopus.R		weigth_pval_ihw_oktopus.R
wgcna_downstream_oktopus.R		wgcna_downstream_oktopus.R