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PaleoClim #228

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tpoisot opened this issue May 7, 2024 · 0 comments · Fixed by #227
Closed

PaleoClim #228

tpoisot opened this issue May 7, 2024 · 0 comments · Fixed by #227
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component:SimpleSDMDatasets domain:datasets triage

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tpoisot commented May 7, 2024

http://www.paleoclim.org/
tpoisot added a commit that referenced this issue Sep 12, 2024
@tpoisot
feat(datasets): add PaleoClim
9ce0a71 
Closes #228
@tpoisot tpoisot self-assigned this Sep 12, 2024
@tpoisot tpoisot linked a pull request Sep 12, 2024 that will close this issue
Use CRS for SimpleSDMLayers #227
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tpoisot added a commit that referenced this issue Sep 13, 2024
@tpoisot
Use CRS for SimpleSDMLayers (#227)
1dd0cdb 
* semver!(layers): v1.0.0

* licence(layers): update

* semver(faux): v0.2 to reflect changes in layers

* doc: README lifecycle badges

* misc(layers)?: drop replacement code in _TEMP

* dependencies: reflect future version for the package numbers

* compat: fix compat number

* chore(layers)!: yes, this breaks everything (for now)

* data(layers): add demo data in non-WGS84 projection

* bug(layers): namespace

* test(layers): all tests are passing

* ci: do not dev component packages (done earlier in the run)

* ci: attempt to bootstrap component packages if required

* ci: build GBIF

* ci: Pkg.develop (not .dev)

* ci: docs

* ci: bootstrap package in docs

* ci: bootstrap phylopic

* ci: bootstrap all packages

* ci: fauxcurrences

* bug(faux): new type name

* ci: detect the correct path whem working from documenter actions

* compat(sdt): add TestItems

* feat(sdt)?: read geotiff

* feat(layers): change the representation of nodata to save space

* feat(layers)?: overloads (coffee break)

* feat(layers): indexing

* feat(layers): mask and mask!

* test(layers): broadcasting done

* feat(sdt)!: move lat/lon to top level package

* feat(layers): northing/easting

* feat(sdt): fix makie code

* feat(sdt): fix GBIF integration

* feat(sdt): read a geotiff

* feat(layers): stride overload

* feat(sdt): save geotiff

* dependecies(sdt): FileIO

* feat(sdt): save is now overloaded from FileIO

* test(sdt): save/read a geotiff

* doc: start testing examples

* feat(layers): + - * /

* feat(sdt): save

* feat(sdt): rescale

* bug(layers): rescale

* doc(sdt): move to tutorials

* bug(sdt): fix the save issue

* dependencies(sdt): -FileIO

* doc(sdt): move one vignette

* doc(sdt): consensus tutorial

* feat(layers): nodata

* feat(layers): mosaic

* doc(sdt):typos

* compat(sdt): +MakieCore

* ci(sdt): add GITHUB_TOKEN to build PRs

* ci: add GITHUB_TOKEN to all packages

* ci: update julia actions to v2

* doc(sdt)?: how-to GBIF

* doc(sdt): how-to gbif data

* doc(sdt): cleanup doc files

* feat(layers): export mosaic

* doc(sdt): show figure

* doc(sdt)?: how-to mask a layer

* doc(sdt): how-to mask

* doc: change howto path

* doc(sdt): -Literate

* doc: list of layers

* feat(sdt): future layers

* feat(sdt): import with WGS84 if there is no projection info in the geotiff

* doc: future tutoria;

* bug(layers); tiling

* bug(layers): this is yucky asf

* bug(faux): correct filtering of coordinates

* doc(sdt): fauxcurrences

* doc: split layer title change

* feat(layers): quantize

* feat(layers): quantize

* doc: cleanup

* feat(sdm): BiodiversityMapping

* semver(sdt): v0.2.0

* compat(sdt): MakieCore 0.8

* chore: CONTRIBUTING

* feat(datasets)?: BiodiversityMapping

* compat(sdt): SimpleSDMDatasets 0.2

* feat(datasets): BiodiversityMapping

* doc(datasets): new types

* feat(layers)?: slidingwindow

* perf(layers)?: slidingwindow

* perf(layers): slidingwindow

* perf(layers): slidingwindow

* perf(layers): slidingwindow threating

* debug

* semver(sdt): v0.1.0

* feat(sdt)!: REMOVE ASCII

* doc: format

* refactor(sdt): linter + format

* feat(layers): op with numbers

* feat(layers): pairwise bool

* feat(layers): tuple version of rescale

* doc: vignette on statistics on layers

* doc: layers and occ data

* feat(layers)!: updated mask + fill + zeros + ones

* feat(sdt): mask by gbif record

* feat(layers): add zeros/ones

* refactor(sdt): pseudoabsence

* refactor(sdt): export pseudoabsences

* feat(sdt): scatter a single layer using makie

* doc: pseudo absences

* bug(datasets): layer descriptions for amphibians

* doc: update data loading

* doc: use CM in the fauxcurrence example

* doc: update the pseudoabsence code

* bug(sdt): background selection

* oopsie

* doc: spacing

* test(sdt): rm

* feat(sdt): reveal! hidden method

* format(sdt): whitespace

* feat(layers): bilinear interpolation

* chore(pylopic): format

* doc: use a different dataset

* chore(layers): remove @info call

* chore(sdt): move io into the layers package

* some cleanup

* bug(layers): wrong export SRS

* bug(layers): interpolation used the wrong bounding box

* test(layers): fix outcome

* doc(layer): docstring for SDMLayer

* feat(datasets): add PaleoClim
Closes #228

* feat(layers): uses proj string by default

* doc(datasets): paleoclim
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component:SimpleSDMDatasets domain:datasets triage
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Species Distribution Toolkit
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Use CRS for SimpleSDMLayers PoisotLab/SpeciesDistributionToolkit.jl
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