Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Next #83

Merged
merged 41 commits into from
Sep 5, 2019
Merged

Next #83

merged 41 commits into from
Sep 5, 2019

Commits on Apr 4, 2019

  1. 🐛 convert bool array into bitarray

    @evadelmas
    evadelmas committed Apr 4, 2019
    Configuration menu
    Copy the full SHA
    e868bca View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2019

  1. 🚧 keep track of extinctions

    @evadelmas
    evadelmas committed Apr 12, 2019
    Configuration menu
    Copy the full SHA
    60eac6a View commit details
    Browse the repository at this point in the history

Commits on Apr 15, 2019

  1. Keep track of extinctions

    @evadelmas
    evadelmas committed Apr 15, 2019
    Configuration menu
    Copy the full SHA
    f8f5b5c View commit details
    Browse the repository at this point in the history

  2. Track extinctions in the same way for all rewiring methods

    @evadelmas
    evadelmas committed Apr 15, 2019
    Configuration menu
    Copy the full SHA
    376a208 View commit details
    Browse the repository at this point in the history

  3. Keep track of the matrices

    @evadelmas
    evadelmas committed Apr 15, 2019
    Configuration menu
    Copy the full SHA
    2207ccd View commit details
    Browse the repository at this point in the history

Commits on Apr 16, 2019

  1. Change tests accordingly

    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    def47c7 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #69 from PoisotLab/fix_extinction_tracking 

    Fix extinction tracking
    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    c8b3019 View commit details
    Browse the repository at this point in the history

  3. 🐛 Remove nutrient concentration from integrator before rewiring

    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    15161b7 View commit details
    Browse the repository at this point in the history

  4. ✏️

    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    4d009c7 View commit details
    Browse the repository at this point in the history

  5. 🐛 can't use parameters inside callcack function

    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    60432fd View commit details
    Browse the repository at this point in the history

  6. 🐛 remove parameters argument from affect function

    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    7fa55c1 View commit details
    Browse the repository at this point in the history

  7. Merge pull request #73 from PoisotLab/fix_ADBM_nutrients 

    Fix adbm nutrients
    @evadelmas
    evadelmas committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    f2d74cd View commit details
    Browse the repository at this point in the history

Commits on May 24, 2019

  1. 🚧 change callbacks to fix zombie species

    @evadelmas
    evadelmas committed May 24, 2019
    Configuration menu
    Copy the full SHA
    9b9f58e View commit details
    Browse the repository at this point in the history

  2. Fix zombies species 🐛 (changed callback)

    Eva Delmas committed May 24, 2019
    Configuration menu
    Copy the full SHA
    4b7f3f5 View commit details
    Browse the repository at this point in the history

Commits on May 27, 2019

  1. Change default value for extinction_threshold

    @evadelmas
    evadelmas committed May 27, 2019
    Configuration menu
    Copy the full SHA
    997e672 View commit details
    Browse the repository at this point in the history

  2. Cleaning

    @evadelmas
    evadelmas committed May 27, 2019
    Configuration menu
    Copy the full SHA
    066db56 View commit details
    Browse the repository at this point in the history

Commits on May 28, 2019

  1. Zombie species (#78) 

    🚑 Closes #77
    @evadelmas
    evadelmas committed May 28, 2019
    Configuration menu
    Copy the full SHA
    8bf65e9 View commit details
    Browse the repository at this point in the history

  2. locally set biomass to 0.0 when it's approx. 0.0 (atol = 1e-5) to avo… 

    …id domain error when exponentiating
    @evadelmas
    evadelmas committed May 28, 2019
    Configuration menu
    Copy the full SHA
    1b65f5c View commit details
    Browse the repository at this point in the history

  3. Avoid DomainError when hill exponent is 1<h<2 (#79) 

    🚑 fixes #76
    @evadelmas
    evadelmas committed May 28, 2019
    Configuration menu
    Copy the full SHA
    5f4e7a7 View commit details
    Browse the repository at this point in the history

  4. Remove unecessary index

    @evadelmas
    evadelmas committed May 28, 2019
    Configuration menu
    Copy the full SHA
    5ddee57 View commit details
    Browse the repository at this point in the history

Commits on May 29, 2019

  1. ✅ extinctions

    @evadelmas
    evadelmas committed May 29, 2019
    Configuration menu
    Copy the full SHA
    3e4ee2e View commit details
    Browse the repository at this point in the history

  2. ✅ extinctions with nutrients (and removed unecessary callback)

    @evadelmas
    evadelmas committed May 29, 2019
    Configuration menu
    Copy the full SHA
    d7f4fb9 View commit details
    Browse the repository at this point in the history

  3. ✅ clean redundant module names

    @evadelmas
    evadelmas committed May 29, 2019
    Configuration menu
    Copy the full SHA
    4471cbb View commit details
    Browse the repository at this point in the history

  4. ✏️

    @evadelmas
    evadelmas committed May 29, 2019
    Configuration menu
    Copy the full SHA
    9f19597 View commit details
    Browse the repository at this point in the history

Commits on Jun 11, 2019

  1. 🚑 producer_growth

    @evadelmas
    evadelmas committed Jun 11, 2019
    Configuration menu
    Copy the full SHA
    282c062 View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2019

  1. Fix build (#80) 

    * error not reproducible locally, solved by updating packages
    @evadelmas
    evadelmas committed Jul 4, 2019
    Configuration menu
    Copy the full SHA
    5a6a00d View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2019

  1. Temperature instabilities (#81) 

    Scaling of biological rates controlled by new keywords scale_growth, scale_metabolism and scale_maxcons (could help with #74)
    @evadelmas
    evadelmas committed Jul 5, 2019
    Configuration menu
    Copy the full SHA
    768615b View commit details
    Browse the repository at this point in the history

  2. periodic ADBM rewiring (#82) 

    New keywords adbm_trigger and adbm_interval control how rewiring is triggered for the adbm model, + ✅ and 📝
    @evadelmas
    evadelmas committed Jul 5, 2019
    Configuration menu
    Copy the full SHA
    c503868 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into next

    @evadelmas
    evadelmas committed Jul 5, 2019
    Configuration menu
    Copy the full SHA
    b90dab6 View commit details
    Browse the repository at this point in the history

Commits on Jul 6, 2019

  1. ✅ extinctions and extinctions tracking

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    f5684af View commit details
    Browse the repository at this point in the history

  2. Merge branch 'next' of https://github.com/PoisotLab/BioEnergeticFoodW… 

    …ebs.jl into next
    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    699e78d View commit details
    Browse the repository at this point in the history

  3. House cleaning

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    2d32579 View commit details
    Browse the repository at this point in the history

  4. track extinction even when there is no rewiring

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    dbb9587 View commit details
    Browse the repository at this point in the history

  5. 🐛

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    ea64722 View commit details
    Browse the repository at this point in the history

  6. 🐛

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    8ce69d7 View commit details
    Browse the repository at this point in the history

  7. ✏️

    @evadelmas
    evadelmas committed Jul 6, 2019
    Configuration menu
    Copy the full SHA
    21b9ff3 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2019

  1. add version field to Project

    @evadelmas
    evadelmas committed Jul 9, 2019
    Configuration menu
    Copy the full SHA
    d890cc7 View commit details
    Browse the repository at this point in the history

  2. Density dependent mortality for consumers (#84) 

    ✨ Density dependent mortality for producers and consumers
    @evadelmas
    evadelmas committed Jul 9, 2019
    Configuration menu
    Copy the full SHA
    de53e67 View commit details
    Browse the repository at this point in the history

  3. add compat field to Project

    @evadelmas
    evadelmas committed Jul 9, 2019
    Configuration menu
    Copy the full SHA
    246ccf2 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'next' of https://github.com/PoisotLab/BioEnergeticFoodW… 

    …ebs.jl into next
    @evadelmas
    evadelmas committed Jul 9, 2019
    Configuration menu
    Copy the full SHA
    71926e6 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2019

  1. ⬆️

    @evadelmas
    evadelmas committed Aug 7, 2019
    Configuration menu
    Copy the full SHA
    5a26d78 View commit details
    Browse the repository at this point in the history