ndx-franklab-novela Extension for NWB

About

ndx-franklab-novela is a python package containing NWB custom extensions.

How to install

Add ndx-franklab-novela to your conda environment
conda install -c conda-forge -c novelakrk ndx-franklab-novela

Extensions

AssociatedFiles

Representation of associated files in NWB
Attributes:
description string: description of associated file
content string: content of associated file
task_epochs string: id of epochs with task that is descripted by associated files

HeaderDevice

Representation of HeaderDevice in NWB.
Attributes:
headstage_serial string: headstage_serial from header global configuration
headstage_smart_ref_on string: headstage_smart_ref_on from header global configuration
realtime_mode string: realtime_mode from header global configuration
headstage_auto_settle_on string: headstage_auto_settle_on from header global configuration
timestamp_at_creation string: timestamp_at_creation from header global configuration
controller_firmware_version string: conntroller_firmware_version from header global configuration
controller_serial string: conntroller_serial from header global configuration
save_displayed_chan_only string: save_displayed_chan_only from header global configuration
headstage_firmware_version string: headstage_firmware_version from header global configuration
qt_version string: qt_version from header global configuration
compile_date string: compile_date from header global configuration
compile_time string: compile_time from header global configuration
file_prefix string: file_prefix from header global configuration
headstage_gyro_sensor_on string: headstage_gyro_sensor_on from header global configuration
headstage_mag_sensor_on string: headstage_mag_sensor_on from header global configuration
trodes_version string: trodes_version from header global configuration
headstage_accel_sensor_on string: headstage_accel_sensor_on from header global configuration
commit_head string: commit_head from header global configuration
system_time_at_creation string: system_time_at_creation from header global configuration
file_path string: file_path from header global configuration

ShanksElectrode

Representation of ShanksElectrode object in NWB
Attributes:
name string: name of the shank
rel_x float: the rel_x value of this electrode
rel_y float: the rel_y value of this electrode
rel_z float: the rel_z value of this electrode of p

Shank

Representation of Shank object in NWB
Attributes:
name string: name of the shank
shanks_electrodes list,tuple: 'electrodes in shank', 'default': list()

Probe

Representation of Probe object in NWB
Attributes:
id int: unique id of the probe
probe_type string: type of probe
units string: units in device
probe_description string: probe_description of probe
contact_side_numbering bool: is contact_side_numbering enabled
contact_size float: value of contact size as float
shanks object: shanks in the probe

DataAcqDevice

Representation of DataAcqDevice object in NWB
Attributes:
system string: system of device
amplifier string: amplifier (default: '')
adc_circuit string: adc_circuit (default: '')

CameraDevice

Representation of CameraDevice object in NWB
Attributes:
meters_per_pixel float: meter per pixel
model string: model of this camera device
lens string: info about lens in this camera
camera_name string: name of this camera

NbwTimeSeries

Extension of ImageSeries object in NWB
Attributes:
devices list of Device: devices used to record video

This extension was created using ndx-template.