panic: runtime error: index out of range [0] with length 0

[Jokendo-collab]

I have struggled to get a solution to this problem. I am using mzML files and I keep on getting this error. Could you help in solving this problem?
MSFragger version MSFragger-3.2 Batmass-IO version 1.22.1`

terminate called after throwing an instance of 'std::runtime_error'
  what():  locale::facet::_S_create_c_locale name not valid
time="22:34:49" level=info msg="Running the validation and inference on bl1/"
time="22:34:49" level=info msg="Executing PeptideProphet on bl1/"
panic: runtime error: index out of range [0] with length 0

goroutine 1 [running]:
philosopher/lib/ext/peptideprophet.interactParser(0xc00219a180, 0x38, 0xc00219a1c0, 0x37, 0xc00219a200, 0x3e, 0xc00219a240, 0x3c, 0xc00219a280, 0x3b
, ...)
        /workspace/philosopher/lib/ext/peptideprophet/peptideprophet.go:216 +0x22b4
philosopher/lib/ext/peptideprophet.PeptideProphet.Execute(0xc00219a180, 0x38, 0xc00219a1c0, 0x37, 0xc00219a200, 0x3e, 0xc00219a240, 0x3c, 0xc00219a2
80, 0x3b, ...)
        /workspace/philosopher/lib/ext/peptideprophet/peptideprophet.go:123 +0x1d0
philosopher/lib/ext/peptideprophet.Run(0xc000024a50, 0x24, 0xc0005825c0, 0x1c, 0xc000024a80, 0x29, 0xc000024ab0, 0x2b, 0xc000024ae0, 0x22, ...)
        /workspace/philosopher/lib/ext/peptideprophet/peptideprophet.go:70 +0x508
philosopher/lib/pip.PeptideProphet(0xc000024450, 0x24, 0xc000582180, 0x19, 0xc000024510, 0x29, 0xc000024540, 0x28, 0xc0005821a0, 0x1f, ...)
        /workspace/philosopher/lib/pip/pip.go:284 +0x5dd
philosopher/cmd.glob..func13(0x8697fc0, 0xc0000e7e40, 0x2, 0x4)
        /workspace/philosopher/cmd/pipeline.go:85 +0x1058
github.com/spf13/cobra.(*Command).execute(0x8697fc0, 0xc0000e7e00, 0x4, 0x4, 0x8697fc0, 0xc0000e7e00)
        /home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:844 +0x2c2
github.com/spf13/cobra.(*Command).ExecuteC(0x8698a40, 0x41ad01, 0x0, 0x0)
        /home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:945 +0x336
github.com/spf13/cobra.(*Command).Execute(...)
        /home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:885
philosopher/cmd.Execute()
        /workspace/philosopher/cmd/root.go:35 +0x2d
main.main()

[prvst]

Hi Javan. That error seems to indicate that you have some sort of character that PeptideProphet cannot understand. Is your computer locale and language set to English? If not, that is most likely the issue.

[Jokendo-collab]

Hi Nesvilab/philosopher, I am running philosopher on our HPC. I did run philosopher successfully two months ago on the same data. I will check with the system administrator. Kind regards, Javan

…

On Tue, 19 Oct 2021, 03:05 Felipe da Veiga Leprevost, < ***@***.***> wrote: Hi Javan. That error seems to indicate that you have some sort of character that PeptideProphet cannot understand. Is your computer locale and language set to English? If not, that is most likely the issue. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#286 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AGJ34OYVIBEXB4E3WOW4IV3UHSY3DANCNFSM5GHQWJKQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.