Added obs values and color coding #80
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adcroft
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Oct 5, 2018
…to dev/master PR from NCAR: - NOAA-GFDL/MOM6@c77ad425c Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master - NOAA-GFDL/MOM6@c09a6611a Merge pull request #4 from alperaltuntas/bkgnd_mixing_fix - NOAA-GFDL/MOM6@3666d609d read prandtl_bknd for all cases - NOAA-GFDL/MOM6@4306feb4b end if to endif and end do to enddo - NOAA-GFDL/MOM6@3714a3955 un-indent subroutines - NOAA-GFDL/MOM6@caec6dd27 read prandtl_bkgnd only for cvmix or horiz_varying_background - NOAA-GFDL/MOM6@f91944488 fix divide by error if Kd=0.0 - NOAA-GFDL/MOM6@67b041352 Merge pull request #4 from NCAR/dev/ncar - NOAA-GFDL/MOM6@bf44b18b5 Merge branch 'dev/master' into dev-ncar-candidate-2018-09-26 - NOAA-GFDL/MOM6@bcb195a83 Merge pull request #80 from gustavo-marques/pass_OBLD_caps - NOAA-GFDL/MOM6@6f6f92a51 Change melt potential from time accumulated to instantaneous - NOAA-GFDL/MOM6@9f0676e83 Copy Hml into sfc_state, so that caps can access it - NOAA-GFDL/MOM6@6ccd94c73 Pass Hml, from ePBL or KPP, via a call to diabatic - NOAA-GFDL/MOM6@405061779 Add OBLD into MCT cap - NOAA-GFDL/MOM6@1ced255e0 Merge pull request #78 from gustavo-marques/update_melt_potential - NOAA-GFDL/MOM6@d32386dc5 Allocates visc%MLD when hfreeze >= 0.0 - NOAA-GFDL/MOM6@ddccc44c9 Copy OBLD to visc%MLD when using KPP - NOAA-GFDL/MOM6@d3d8215bd Add a new implementation for the melt potential calculation - NOAA-GFDL/MOM6@f1445de5f Add option to use melt potential in mct and couple_driver - NOAA-GFDL/MOM6@9c8b3c5da Comment DEBUG message - NOAA-GFDL/MOM6@b7d83affc Merge pull request #73 from alperaltuntas/horiz_varying_background - NOAA-GFDL/MOM6@4a7de48ad Merge pull request #77 from gustavo-marques/add_melt_potential_mct - NOAA-GFDL/MOM6@5d6ff165f Merge branch 'dev/ncar' into add_melt_potential_mct - NOAA-GFDL/MOM6@d0bc3bc2f Fix bug and make sure melt potential is always <= 0 - NOAA-GFDL/MOM6@c6b253400 Pass melt/freeze potential to coupler; reset melt_potential - NOAA-GFDL/MOM6@eb2c69f1d Replace units (W/m^2 to J/m^2) in the comments - NOAA-GFDL/MOM6@be0e7a844 Remove dt from extract_surface_state - NOAA-GFDL/MOM6@12011dec9 Merge pull request #76 from gustavo-marques/merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@05d6c805a Update melt_potential again, but values are still ~ 3 x smaller - NOAA-GFDL/MOM6@0a55527b0 Merge branch 'dev/ncar' into merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@7347ad973 Update calculation of melt_potential - NOAA-GFDL/MOM6@4e5bf7494 Change calculation of melt_potential - NOAA-GFDL/MOM6@60eb7ec30 Add comment about icefrq used in Hycom - NOAA-GFDL/MOM6@d981745f8 Fix a call to ocn_export - NOAA-GFDL/MOM6@b52db1ff5 Allocate/deallocate melt_potential - NOAA-GFDL/MOM6@3cdd97bfa Add option to calculate melt potential - NOAA-GFDL/MOM6@a840dc0f4 Pass melt potential (o2x_Fioo_q) via mct driver - NOAA-GFDL/MOM6@4e41df988 Merge pull request #3 from NCAR/dev/ncar - NOAA-GFDL/MOM6@02d9be2f9 rm temporarily the noupc cap - NOAA-GFDL/MOM6@04845d4e8 Merge pull request #74 from NCAR/dev/nuopc - NOAA-GFDL/MOM6@25873994d rename mom_cap - NOAA-GFDL/MOM6@353f60f07 Merge pull request #75 from NCAR/dev/nuopc_alper - NOAA-GFDL/MOM6@0cdce0817 Merge branch 'dev-master-candidate-2018-07-16' into merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@116fdfba4 rm trailing spaces - NOAA-GFDL/MOM6@838de5293 improve mct cap doxumentation - NOAA-GFDL/MOM6@290d4f5e4 add only keywords - NOAA-GFDL/MOM6@ad1a2957d limit line widths to 120 chars - NOAA-GFDL/MOM6@a2c6a7a2f improve tab width consistency - NOAA-GFDL/MOM6@c2655b3ab fix call to shelf_calc_flux - NOAA-GFDL/MOM6@8606be9df removed more trailing white space - NOAA-GFDL/MOM6@d32333e07 fixed trailing white space - NOAA-GFDL/MOM6@7fb01ffe9 removed trailing whitespace - NOAA-GFDL/MOM6@f49c205eb more cleanup of cesm cap - NOAA-GFDL/MOM6@450f87cbc more changes to get the nuopc cap working - NOAA-GFDL/MOM6@403f59a8c changes needed to get nuopc cap restarting correctly - NOAA-GFDL/MOM6@6f43605f9 removed use for shr_flds_dom_coord and shr_flds_dom_other by hardwiring names - NOAA-GFDL/MOM6@2d89fa416 merged to head of dev/ncar - NOAA-GFDL/MOM6@62dea759f updates for get nuopc working - NOAA-GFDL/MOM6@bd90705ea Merge pull request #72 from gustavo-marques/update_KPP - NOAA-GFDL/MOM6@ebceaece5 add horiz_varying_background scheme - NOAA-GFDL/MOM6@48845179f check whether KD, KV and PRANDTL_BKGND are compatible - NOAA-GFDL/MOM6@4b2bd2f13 Merge branch 'kpp_changes' into horiz_varying_background - NOAA-GFDL/MOM6@1516d6a40 add safety checks for MOM_bkgnd_mixing schemes - NOAA-GFDL/MOM6@7f67a4596 changes to get mom6 working correctly in nuopc mode and addition of debug output - NOAA-GFDL/MOM6@c4f2a5e7f more updates - NOAA-GFDL/MOM6@9e2578044 Merge branch 'dev/nuopc' of https://github.com/NCAR/MOM6 into dev/nuopc - NOAA-GFDL/MOM6@50e4a654a additional changes to have mom cap nuopc working without a lot of diagnostic output - NOAA-GFDL/MOM6@f3ca0c8df fixes to get mom cap working with cice - NOAA-GFDL/MOM6@eef4bf2d4 Added global grid nx and ny scalars to MOM6 cap for writing history files - NOAA-GFDL/MOM6@b7a88a6cc Merge branch 'mvertens/dev_nuopc' into dev/nuopc - NOAA-GFDL/MOM6@4c1a97fc7 no longer need to scale by mask - since its done in MOM_surface_forcing - NOAA-GFDL/MOM6@5f1b51c72 more cleanup of ocn_comp_mct - NOAA-GFDL/MOM6@3d1962c01 changes to MOM6 to get nuopc and mct caps similar - NOAA-GFDL/MOM6@b10f3434a last set of changes on the mct side to get mct and nuopc caps compatible - NOAA-GFDL/MOM6@972293480 more updates to get nuopc and mct closer - NOAA-GFDL/MOM6@f482863b3 more changes to bring in nuopc and mct caps closer together - NOAA-GFDL/MOM6@8a230737d more udpates to make mct and mom caps similar - NOAA-GFDL/MOM6@06565ec01 major refactor of mct interface - and addition -f MOM_ocean_model.F90 and MOM_surface_forcing.F90 to mct and nuopc cap codes - NOAA-GFDL/MOM6@9fae628cd fixes for having mom6 work with nuopc-cmeps-v0.4 - NOAA-GFDL/MOM6@0a494857f Merge branch 'dev/ncar_nuopc' of https://github.com/mvertens/MOM6 into dev/nuopc - NOAA-GFDL/MOM6@93d7a07bc changes to mom cap to be compatible with nuopcB_180413 - NOAA-GFDL/MOM6@fdc7962b5 updates for cesm-nuopc-cmeps-mom6-nems_cap configuration - NOAA-GFDL/MOM6@d30900b26 update mom6 nuopc cap - NOAA-GFDL/MOM6@2cfa6314a update mom_cap for cesm - NOAA-GFDL/MOM6@5374582b3 update mom cap from NEMS - NOAA-GFDL/MOM6@7bf531bf3 placed the GFDL MOM6 cap as a starting point in the new nuopc_driver/ directory
adcroft
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Oct 12, 2018
Merging in dev/master after PR from NCAR: - NOAA-GFDL/MOM6@587c9b7ac Merge branch 'dev/master' into dev/gfdl - NOAA-GFDL/MOM6@c4d6dd011 Merge pull request #857 from wrongkindofdoctor/user/jml/add_mol_wt_to_aof - NOAA-GFDL/MOM6@c77ad425c Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master - NOAA-GFDL/MOM6@120562440 Merge pull request #858 from MFJansen/patch-1 - NOAA-GFDL/MOM6@7575e39e3 Swapped argument attribute order - NOAA-GFDL/MOM6@76f80bc95 Removed trailing white space - NOAA-GFDL/MOM6@940311546 Bug fix to compute Rd_dx whenever MEKE is used - NOAA-GFDL/MOM6@c09a6611a Merge pull request #4 from alperaltuntas/bkgnd_mixing_fix - NOAA-GFDL/MOM6@3666d609d read prandtl_bknd for all cases - NOAA-GFDL/MOM6@ecefa4c7d added mol_wt dummy argument to atmos_ocean_fluxes in solo_driver - NOAA-GFDL/MOM6@ab7040a0b Merge pull request #4 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@4306feb4b end if to endif and end do to enddo - NOAA-GFDL/MOM6@3714a3955 un-indent subroutines - NOAA-GFDL/MOM6@caec6dd27 read prandtl_bkgnd only for cvmix or horiz_varying_background - NOAA-GFDL/MOM6@f91944488 fix divide by error if Kd=0.0 - NOAA-GFDL/MOM6@67b041352 Merge pull request #4 from NCAR/dev/ncar - NOAA-GFDL/MOM6@2701b7a07 Merge pull request #854 from Hallberg-NOAA/correct_ice_shelf_grid - NOAA-GFDL/MOM6@7effdd26b Merge pull request #3 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@bf44b18b5 Merge branch 'dev/master' into dev-ncar-candidate-2018-09-26 - NOAA-GFDL/MOM6@bcb195a83 Merge pull request #80 from gustavo-marques/pass_OBLD_caps - NOAA-GFDL/MOM6@180e0ea12 (*)Correct the grid used for allocate_forcing_type - NOAA-GFDL/MOM6@6f6f92a51 Change melt potential from time accumulated to instantaneous - NOAA-GFDL/MOM6@9f0676e83 Copy Hml into sfc_state, so that caps can access it - NOAA-GFDL/MOM6@6ccd94c73 Pass Hml, from ePBL or KPP, via a call to diabatic - NOAA-GFDL/MOM6@e23fac158 Merge branch 'Hallberg-NOAA-fix_vertex_shearmix' into dev/gfdl - NOAA-GFDL/MOM6@508bde943 Merge branch 'fix_vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6 into Hallberg-NOAA-fix_vertex_shearmix - NOAA-GFDL/MOM6@9ede9b61a +(*)Corrected halo data when VERTEX_SHEAR=True - NOAA-GFDL/MOM6@1cc8d7202 +Added optional halo_TS arg to set_diffusivity_init - NOAA-GFDL/MOM6@fd6fb2e8b +Added an optional halo argument to geothermal - NOAA-GFDL/MOM6@76a87b41d +Added an optional halo argument to make_frazil - NOAA-GFDL/MOM6@405061779 Add OBLD into MCT cap - NOAA-GFDL/MOM6@1ced255e0 Merge pull request #78 from gustavo-marques/update_melt_potential - NOAA-GFDL/MOM6@d32386dc5 Allocates visc%MLD when hfreeze >= 0.0 - NOAA-GFDL/MOM6@ddccc44c9 Copy OBLD to visc%MLD when using KPP - NOAA-GFDL/MOM6@d3d8215bd Add a new implementation for the melt potential calculation - NOAA-GFDL/MOM6@f1445de5f Add option to use melt potential in mct and couple_driver - NOAA-GFDL/MOM6@9c8b3c5da Comment DEBUG message - NOAA-GFDL/MOM6@b0f123659 Merge pull request #2 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@b7d83affc Merge pull request #73 from alperaltuntas/horiz_varying_background - NOAA-GFDL/MOM6@4a7de48ad Merge pull request #77 from gustavo-marques/add_melt_potential_mct - NOAA-GFDL/MOM6@5d6ff165f Merge branch 'dev/ncar' into add_melt_potential_mct - NOAA-GFDL/MOM6@d0bc3bc2f Fix bug and make sure melt potential is always <= 0 - NOAA-GFDL/MOM6@c6b253400 Pass melt/freeze potential to coupler; reset melt_potential - NOAA-GFDL/MOM6@eb2c69f1d Replace units (W/m^2 to J/m^2) in the comments - NOAA-GFDL/MOM6@be0e7a844 Remove dt from extract_surface_state - NOAA-GFDL/MOM6@12011dec9 Merge pull request #76 from gustavo-marques/merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@05d6c805a Update melt_potential again, but values are still ~ 3 x smaller - NOAA-GFDL/MOM6@0a55527b0 Merge branch 'dev/ncar' into merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@7347ad973 Update calculation of melt_potential - NOAA-GFDL/MOM6@4e5bf7494 Change calculation of melt_potential - NOAA-GFDL/MOM6@60eb7ec30 Add comment about icefrq used in Hycom - NOAA-GFDL/MOM6@d981745f8 Fix a call to ocn_export - NOAA-GFDL/MOM6@b52db1ff5 Allocate/deallocate melt_potential - NOAA-GFDL/MOM6@3cdd97bfa Add option to calculate melt potential - NOAA-GFDL/MOM6@a840dc0f4 Pass melt potential (o2x_Fioo_q) via mct driver - NOAA-GFDL/MOM6@4e41df988 Merge pull request #3 from NCAR/dev/ncar - NOAA-GFDL/MOM6@02d9be2f9 rm temporarily the noupc cap - NOAA-GFDL/MOM6@04845d4e8 Merge pull request #74 from NCAR/dev/nuopc - NOAA-GFDL/MOM6@25873994d rename mom_cap - NOAA-GFDL/MOM6@353f60f07 Merge pull request #75 from NCAR/dev/nuopc_alper - NOAA-GFDL/MOM6@0cdce0817 Merge branch 'dev-master-candidate-2018-07-16' into merge-candidate-2018-07-16 - NOAA-GFDL/MOM6@116fdfba4 rm trailing spaces - NOAA-GFDL/MOM6@838de5293 improve mct cap doxumentation - NOAA-GFDL/MOM6@290d4f5e4 add only keywords - NOAA-GFDL/MOM6@ad1a2957d limit line widths to 120 chars - NOAA-GFDL/MOM6@a2c6a7a2f improve tab width consistency - NOAA-GFDL/MOM6@c2655b3ab fix call to shelf_calc_flux - NOAA-GFDL/MOM6@8606be9df removed more trailing white space - NOAA-GFDL/MOM6@d32333e07 fixed trailing white space - NOAA-GFDL/MOM6@7fb01ffe9 removed trailing whitespace - NOAA-GFDL/MOM6@f49c205eb more cleanup of cesm cap - NOAA-GFDL/MOM6@450f87cbc more changes to get the nuopc cap working - NOAA-GFDL/MOM6@403f59a8c changes needed to get nuopc cap restarting correctly - NOAA-GFDL/MOM6@6f43605f9 removed use for shr_flds_dom_coord and shr_flds_dom_other by hardwiring names - NOAA-GFDL/MOM6@2d89fa416 merged to head of dev/ncar - NOAA-GFDL/MOM6@62dea759f updates for get nuopc working - NOAA-GFDL/MOM6@bd90705ea Merge pull request #72 from gustavo-marques/update_KPP - NOAA-GFDL/MOM6@ebceaece5 add horiz_varying_background scheme - NOAA-GFDL/MOM6@48845179f check whether KD, KV and PRANDTL_BKGND are compatible - NOAA-GFDL/MOM6@4b2bd2f13 Merge branch 'kpp_changes' into horiz_varying_background - NOAA-GFDL/MOM6@1516d6a40 add safety checks for MOM_bkgnd_mixing schemes - NOAA-GFDL/MOM6@7f67a4596 changes to get mom6 working correctly in nuopc mode and addition of debug output - NOAA-GFDL/MOM6@c4f2a5e7f more updates - NOAA-GFDL/MOM6@9e2578044 Merge branch 'dev/nuopc' of https://github.com/NCAR/MOM6 into dev/nuopc - NOAA-GFDL/MOM6@50e4a654a additional changes to have mom cap nuopc working without a lot of diagnostic output - NOAA-GFDL/MOM6@f3ca0c8df fixes to get mom cap working with cice - NOAA-GFDL/MOM6@eef4bf2d4 Added global grid nx and ny scalars to MOM6 cap for writing history files - NOAA-GFDL/MOM6@b7a88a6cc Merge branch 'mvertens/dev_nuopc' into dev/nuopc - NOAA-GFDL/MOM6@4c1a97fc7 no longer need to scale by mask - since its done in MOM_surface_forcing - NOAA-GFDL/MOM6@5f1b51c72 more cleanup of ocn_comp_mct - NOAA-GFDL/MOM6@3d1962c01 changes to MOM6 to get nuopc and mct caps similar - NOAA-GFDL/MOM6@b10f3434a last set of changes on the mct side to get mct and nuopc caps compatible - NOAA-GFDL/MOM6@972293480 more updates to get nuopc and mct closer - NOAA-GFDL/MOM6@f482863b3 more changes to bring in nuopc and mct caps closer together - NOAA-GFDL/MOM6@8a230737d more udpates to make mct and mom caps similar - NOAA-GFDL/MOM6@06565ec01 major refactor of mct interface - and addition -f MOM_ocean_model.F90 and MOM_surface_forcing.F90 to mct and nuopc cap codes - NOAA-GFDL/MOM6@9fae628cd fixes for having mom6 work with nuopc-cmeps-v0.4 - NOAA-GFDL/MOM6@0a494857f Merge branch 'dev/ncar_nuopc' of https://github.com/mvertens/MOM6 into dev/nuopc - NOAA-GFDL/MOM6@93d7a07bc changes to mom cap to be compatible with nuopcB_180413 - NOAA-GFDL/MOM6@fdc7962b5 updates for cesm-nuopc-cmeps-mom6-nems_cap configuration - NOAA-GFDL/MOM6@d30900b26 update mom6 nuopc cap - NOAA-GFDL/MOM6@2cfa6314a update mom_cap for cesm - NOAA-GFDL/MOM6@5374582b3 update mom cap from NEMS - NOAA-GFDL/MOM6@7bf531bf3 placed the GFDL MOM6 cap as a starting point in the new nuopc_driver/ directory
marshallward
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Apr 2, 2022
- NOAA-GFDL/MOM6@356671c20 +Refactor writing the vertical_coordinate file - NOAA-GFDL/MOM6@08582eead add residual loss term for internal tides (#95) - NOAA-GFDL/MOM6@4c5e98e1b Error handler support - NOAA-GFDL/MOM6@2ac64b39c Set INPUT_STR_LENGTH to 1024 - NOAA-GFDL/MOM6@4e94c5d6a Reduce the populate_param_data memory footprint - NOAA-GFDL/MOM6@3b5d2641a Support arbitrarily long parameter spec lines - NOAA-GFDL/MOM6@97331e705 +Better multi-line parameter specification handling - NOAA-GFDL/MOM6@8bf9abbad reworked algebra corner spread, rotation parenthesis (#90) - NOAA-GFDL/MOM6@ce22d7aea add missing shared variable - NOAA-GFDL/MOM6@115d71477 Ice dynamics (#80) - NOAA-GFDL/MOM6@7c3f31bd4 +(*)Write unscaled MOM6 restart files - NOAA-GFDL/MOM6@11d03b13b +Add unit conversion capability for restarts - NOAA-GFDL/MOM6@d5601696e +Stop logging NEW_SPONGES
marshallward
added a commit
that referenced
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Jul 7, 2022
- NOAA-GFDL/MOM6@3b80e443d Follow MOM6 code style guide - NOAA-GFDL/MOM6@0c1e89a2c Add missing units - NOAA-GFDL/MOM6@0e8acd90b +(*)Fix a scaling bug in MOM_horizontal_regridding - NOAA-GFDL/MOM6@005c46066 Impose standard indentation in nuopc_cap code - NOAA-GFDL/MOM6@3b05cdfdb Impose standard indentation in most driver code - NOAA-GFDL/MOM6@9b1d382ae Style compliance in external/ODA_hooks code - NOAA-GFDL/MOM6@1d8fb5091 +Style compliance in external/drifters code - NOAA-GFDL/MOM6@84d78a661 +Revised stochastics code for style compliance - NOAA-GFDL/MOM6@8f97b3d2f Corrections to cell-averaged density computation (#213) - NOAA-GFDL/MOM6@41a278b81 Candidate branch main->dev/gfdl - NOAA-GFDL/MOM6@e73c231fb +Set thickness_units for use by deta_dt diagnostic - NOAA-GFDL/MOM6@2cd228fbe Adds conditional for setting fluxes%heat_content_* - NOAA-GFDL/MOM6@fc3ab450b Avoid rotating arrays that are not associated - NOAA-GFDL/MOM6@f81414708 Add missing logical to control allocation of fluxes - NOAA-GFDL/MOM6@b9b67a838 Changes needed for when enthalpy is via coupler - NOAA-GFDL/MOM6@fc05abe21 Modifications needed for when enthalpy is via CPL - NOAA-GFDL/MOM6@7924fbaee Modify log/description of ENTHALPY_FROM_COUPLER - NOAA-GFDL/MOM6@b7665f481 Heat conservation when enthalpy is via coupler - NOAA-GFDL/MOM6@72daf7b0c Add option to receive enthalpy fluxes via coupler - NOAA-GFDL/MOM6@861a8f14d Use ODA_2018_ANSWERS to specify ODA remapping - NOAA-GFDL/MOM6@48ae48ae7 Remove unused variables - NOAA-GFDL/MOM6@684878ee4 Add a deta_dt diagnostic to the split BT/BC mode (#99) - NOAA-GFDL/MOM6@f6fc6ce17 FMS2: get_field_sizes with FMS1 emulation - NOAA-GFDL/MOM6@f54338ad1 Fix non-standard white space (#109) - NOAA-GFDL/MOM6@d729c679a +Remove append_substring - NOAA-GFDL/MOM6@d8bc9639e Removal of non-standard extensions - NOAA-GFDL/MOM6@7a147ad41 +Document or eliminate undocumented interfaces - NOAA-GFDL/MOM6@e9fdf5de3 Standardized syntax in mask2d logical tests - NOAA-GFDL/MOM6@c150f37a1 Correct --with-driver args for coupled tests (#106) - NOAA-GFDL/MOM6@6809ee3a4 Fix tides_CS attribute in unsplit mode (#103) - NOAA-GFDL/MOM6@28ff86e4e +Convective adjustment outside regridding_main - NOAA-GFDL/MOM6@fd2060cda +Add Hybgen regridding - NOAA-GFDL/MOM6@138396107 It would be good to initialize CS%answers_2018. - NOAA-GFDL/MOM6@8d92579b2 Deleted an unused function, made public OBC funcs. - NOAA-GFDL/MOM6@9c22ff272 Taking out some unused OBC constants. - NOAA-GFDL/MOM6@3c7bd19ee More cleaning up for issue #54 - NOAA-GFDL/MOM6@d2fb2d0ed MOM_random: Set mask with bits rather than integer - NOAA-GFDL/MOM6@a5350219b Mixed layer restrat statement function refactor - NOAA-GFDL/MOM6@936b11fb6 Format string fixes; function index reorder - NOAA-GFDL/MOM6@4b218c07a Tweaks in response to Hallberg's comments. - NOAA-GFDL/MOM6@57a1a8ae2 Rest of fix for issue #54. - NOAA-GFDL/MOM6@41757c7a5 Fix the rebase - NOAA-GFDL/MOM6@f50551ce4 Fix to Z_RESCALE bug in ePBL. - NOAA-GFDL/MOM6@1e6924e03 More fixes for issue #54. - NOAA-GFDL/MOM6@24f412d77 Part of the fix for issue #54. - NOAA-GFDL/MOM6@6f48b9d1d Oops, more cleanup. - NOAA-GFDL/MOM6@1853352a6 correction on type in directory name - NOAA-GFDL/MOM6@28003a8f7 Adding in that SAL commit again. - NOAA-GFDL/MOM6@4a9162839 Undoing some patches from others - NOAA-GFDL/MOM6@11fa11406 Done with EPBL docs? - NOAA-GFDL/MOM6@918742bbb Working on boundary layer docs. - NOAA-GFDL/MOM6@a180d3316 return a more accurate error message in MOM_stochasics - NOAA-GFDL/MOM6@1428a36ac Several little things, one is making sponge less verbose. - NOAA-GFDL/MOM6@aac6b75dd update to gfdl 20210806 (#74) - NOAA-GFDL/MOM6@71f7354d9 add comments - NOAA-GFDL/MOM6@8775c6d41 revert logic wrt increments - NOAA-GFDL/MOM6@64e83b7aa add logic to remove incrments from restart if outside IAU window - NOAA-GFDL/MOM6@3e573eb11 add write_stoch_restart_ocn to MOM_stochastics - NOAA-GFDL/MOM6@8382652d5 doxygen cleanup - NOAA-GFDL/MOM6@97bbdbf6f move stochastics to external directory - NOAA-GFDL/MOM6@199126eb7 stochastic physics re-write - NOAA-GFDL/MOM6@0932b9ec1 remove debug statements - NOAA-GFDL/MOM6@ebe9d1f6f remove PE_here from mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@077413af9 clean up of mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@b12c09cbb revert MOM_domains.F90 - NOAA-GFDL/MOM6@80fdfb4e8 remove stochastics container - NOAA-GFDL/MOM6@65e0e71bb clean up of code for MOM6 coding standards - NOAA-GFDL/MOM6@121ce71b3 correct coupled_driver/ocean_model_MOM.F90 and other cleanup - NOAA-GFDL/MOM6@045d5c2db make stochastics optional - NOAA-GFDL/MOM6@f874d1113 clean up MOM_domains - NOAA-GFDL/MOM6@390fee8d0 re-write of stochastic code to remove CPP directives - NOAA-GFDL/MOM6@48354da37 fix non stochastic ePBL calculation - NOAA-GFDL/MOM6@583c6ae1e clean up code - NOAA-GFDL/MOM6@878543d22 clean up debug statements - NOAA-GFDL/MOM6@095c36ca4 additions for stochy restarts - NOAA-GFDL/MOM6@6ff36ec6d add stochy_restart writing to mom_cap - NOAA-GFDL/MOM6@cefdb81ed Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@2f5d83d3c Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@b6ac287b6 Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@45acf37f1 cleanup of code and enhancement of ePBL perts - NOAA-GFDL/MOM6@e853f839b additions for stochastic physics and ePBL perts - NOAA-GFDL/MOM6@78c574be1 Add missing h_neglect (#98) - NOAA-GFDL/MOM6@edd3f9c68 +Corrected units in dumbbell get_param calls - NOAA-GFDL/MOM6@db59e142d MOM_neutral_diffusion code cleanup - NOAA-GFDL/MOM6@063ef75fa Minor get_param call reformatting - NOAA-GFDL/MOM6@6bfd073b2 +Avoid nonsensical units descriptions - NOAA-GFDL/MOM6@c626cc464 MOM_internal_tides diagnostic code simplification - NOAA-GFDL/MOM6@305f74473 Rescale new_depth in apply_topography_edits_from_file - NOAA-GFDL/MOM6@39206d91b Simplify diagnostics using global_area_integral - NOAA-GFDL/MOM6@a6992a9d6 Convert global_area_mean diagnostics when writing - NOAA-GFDL/MOM6@9c4363ed2 +Add optional conversion argument to register_diag_scalar - NOAA-GFDL/MOM6@356671c20 +Refactor writing the vertical_coordinate file - NOAA-GFDL/MOM6@08582eead add residual loss term for internal tides (#95) - NOAA-GFDL/MOM6@4c5e98e1b Error handler support - NOAA-GFDL/MOM6@2ac64b39c Set INPUT_STR_LENGTH to 1024 - NOAA-GFDL/MOM6@4e94c5d6a Reduce the populate_param_data memory footprint - NOAA-GFDL/MOM6@3b5d2641a Support arbitrarily long parameter spec lines - NOAA-GFDL/MOM6@97331e705 +Better multi-line parameter specification handling - NOAA-GFDL/MOM6@8bf9abbad reworked algebra corner spread, rotation parenthesis (#90) - NOAA-GFDL/MOM6@ce22d7aea add missing shared variable - NOAA-GFDL/MOM6@115d71477 Ice dynamics (#80) - NOAA-GFDL/MOM6@7c3f31bd4 +(*)Write unscaled MOM6 restart files - NOAA-GFDL/MOM6@11d03b13b +Add unit conversion capability for restarts - NOAA-GFDL/MOM6@966d50f15 (*)Minor MOM_hor_visc code cleanup - NOAA-GFDL/MOM6@ab4d226bb +(*)MOM_hor_visc bug fix and loop size cleanup - NOAA-GFDL/MOM6@8c6ae0eea Corrected the license on RGC_initialization.F90 - NOAA-GFDL/MOM6@a002923ae (*)Fix rescaling in RGC_initialize_sponges - NOAA-GFDL/MOM6@14a28f477 Avoid copying the tracer registry in advect_tracer - NOAA-GFDL/MOM6@5a8590b03 +Add Laplacian diffusion of interface heights - NOAA-GFDL/MOM6@406bc59cd Merge remote-tracking branch 'alexandra/main' into dev/esmg - NOAA-GFDL/MOM6@9c341f06e Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@3675c2169 +Add Hybgen remapping options - NOAA-GFDL/MOM6@304294260 Fix nolibs build in CI pipeline - NOAA-GFDL/MOM6@d5601696e +Stop logging NEW_SPONGES - NOAA-GFDL/MOM6@6963b222d Add KPP nonlocal term to passive tracers (#202) - NOAA-GFDL/MOM6@efa503bd2 bugfix: static h_new shape remaining_transport_sum - NOAA-GFDL/MOM6@b4a67c1ad Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@464046138 (*)Avoid negative thicknesses in mixed_layer_restrat - NOAA-GFDL/MOM6@9a01cd501 +Add ALE options mimicking Hycom - NOAA-GFDL/MOM6@9caa7010f (+) Refactor of MOM_file_parser - NOAA-GFDL/MOM6@fa2832c11 +(*)Rescale variables with homogenize_forcing - NOAA-GFDL/MOM6@b3e80f73f +(*)Add tmp_scale arguments to global_area_mean - NOAA-GFDL/MOM6@a468bee03 Removed trailing white space - NOAA-GFDL/MOM6@a0d02387e (*)+Use reproducing stocks for all tracer packages - NOAA-GFDL/MOM6@1bf82205a (*)+Reproducing tracer stocks - NOAA-GFDL/MOM6@8197cea79 Use global_mass_integral in lateral_bdry_diff - NOAA-GFDL/MOM6@9c7bf292d +Add global_mass_int_EFP - NOAA-GFDL/MOM6@d46dbc775 Report mean temperature from MOM_state_stats() - NOAA-GFDL/MOM6@65b2c8249 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@149073fea Remove hard-wired parameter in adjustEtaToFitBathymetry (#69) - NOAA-GFDL/MOM6@32e1ecf45 Fixes issues with the GME code and get_param calls for Leith options (#65) - NOAA-GFDL/MOM6@098f5c9d9 fix u10_sqr dimensional scaling - NOAA-GFDL/MOM6@b39648adc merge with latest main (2020feb17) and resolve conflicts - NOAA-GFDL/MOM6@e84160915 remove unnecessary optional flag - NOAA-GFDL/MOM6@c166358b2 Add optional argument to FMS2 version of get_field_size - NOAA-GFDL/MOM6@fc5253f73 (*)Correct memory declarations in MOM_regridding - NOAA-GFDL/MOM6@035ae5c85 Misc dimensional consistency fixes in regridding, remapping, and MEKE routines - NOAA-GFDL/MOM6@75bf521e2 +Move MOM_scaling_check.F90 to MOM_unique_scales.F90 - NOAA-GFDL/MOM6@56401b637 +Add MOM_check_scaling.F90 and MOM_scaling_check.F90 - NOAA-GFDL/MOM6@c18185422 fix line lenght error in MOM_wave_interface - NOAA-GFDL/MOM6@ebb643af9 Oops, more cleanup. - NOAA-GFDL/MOM6@65cccb7a0 correction on type in directory name - NOAA-GFDL/MOM6@45d615191 Adding in that SAL commit again. - NOAA-GFDL/MOM6@3dbf2f58d Undoing some patches from others - NOAA-GFDL/MOM6@71908c8fd Done with EPBL docs? - NOAA-GFDL/MOM6@b7b4141a6 Working on boundary layer docs. - NOAA-GFDL/MOM6@c3ff425ce return a more accurate error message in MOM_stochasics - NOAA-GFDL/MOM6@348a81b63 Several little things, one is making sponge less verbose. - NOAA-GFDL/MOM6@9221b5d50 update to gfdl 20210806 (#74) - NOAA-GFDL/MOM6@59e733f3e add comments - NOAA-GFDL/MOM6@15e402940 revert logic wrt increments - NOAA-GFDL/MOM6@78b8d7919 add logic to remove incrments from restart if outside IAU window - NOAA-GFDL/MOM6@a5d90655d add write_stoch_restart_ocn to MOM_stochastics - NOAA-GFDL/MOM6@e91c96609 doxygen cleanup - NOAA-GFDL/MOM6@cf1d29628 move stochastics to external directory - NOAA-GFDL/MOM6@493717a35 stochastic physics re-write - NOAA-GFDL/MOM6@a67bc78a2 remove debug statements - NOAA-GFDL/MOM6@e2431bc81 remove PE_here from mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@ea36db238 clean up of mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@4c931094f revert MOM_domains.F90 - NOAA-GFDL/MOM6@c7531a75f remove stochastics container - NOAA-GFDL/MOM6@08dc1a44b clean up of code for MOM6 coding standards - NOAA-GFDL/MOM6@e80d5f57e correct coupled_driver/ocean_model_MOM.F90 and other cleanup - NOAA-GFDL/MOM6@0bf4ff0a1 make stochastics optional - NOAA-GFDL/MOM6@9e7029ca8 clean up MOM_domains - NOAA-GFDL/MOM6@58f1fe98f re-write of stochastic code to remove CPP directives - NOAA-GFDL/MOM6@15dde3622 fix non stochastic ePBL calculation - NOAA-GFDL/MOM6@49111ff9f clean up code - NOAA-GFDL/MOM6@0c48bfc6a clean up debug statements - NOAA-GFDL/MOM6@becb4420e additions for stochy restarts - NOAA-GFDL/MOM6@36ce2d108 add stochy_restart writing to mom_cap - NOAA-GFDL/MOM6@5f6973b4d Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@c48a46ae0 Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@a0e5b56af Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@a534541c5 cleanup of code and enhancement of ePBL perts - NOAA-GFDL/MOM6@0add693a8 additions for stochastic physics and ePBL perts - NOAA-GFDL/MOM6@a00b7799f Merge remote-tracking branch 'NCAR/surfbands_refactor' into BGR_Stokes_DDT_Fixes - NOAA-GFDL/MOM6@dc59b117b Fixing restart issue with Stokes time tendency term. - NOAA-GFDL/MOM6@f89fd1351 Fixing diagnostic mode for vortex force correction term. - NOAA-GFDL/MOM6@58874a5f3 Updates to Stokes drift terms, primarily the pressure gradient routine. - NOAA-GFDL/MOM6@4f592f298 More changes for surfbands wave coupling: - for ustkb and vstkb, call pass_var, instead of pass_vector because they are on h grd. -remove unused ustk0 and vstk0 arrays. - correct the order of wave-related get param & allocate_forcing calls in nuopc cap. - add lamult flag to allocate_forcing_by_group because lamult should only be allocated if wave_method=="EFACTOR". - NOAA-GFDL/MOM6@28268d3e6 fixes in MOM_wave_interface array indices - NOAA-GFDL/MOM6@dc93bdeef Fixes for Stokes time tendency terms - NOAA-GFDL/MOM6@b619d38eb remove duplicate assignments of dvdx and dudy. These duplicate assignments incorrectly override dvdx and dudy when surfbands wave coupling is on. - NOAA-GFDL/MOM6@cb671d2c0 merge with latest dev/ncar and resolve conflicts - NOAA-GFDL/MOM6@d4c36a60a Fix openmp test by adding Stokes_VT to shr clause in MOM_CoriolisAdv. Also remove the Passive_Stokes_VF block since it's never set to true. - NOAA-GFDL/MOM6@e2ab77e99 initialize wave option flags to false - NOAA-GFDL/MOM6@c880a156a For the drivers calling MOM_wave_interface_init, add the optional waves_csp arg to initialize_MOM calls so as to ensure that the waves_csp is allocated. This commit also has several misc doxygen fixes. - NOAA-GFDL/MOM6@e7f628e17 refactoring and changes to write stokes drift profile to restart file when surfbands wave coupling mode is on. - NOAA-GFDL/MOM6@15c3d53de changes in the nuopc cap to support arbitrary stokes bands With these changes, arbitrary number of of partitioned stokes drift components may be imported from ww3 when coupled within cesm. After the planned unification of ww3 nuopc caps of CESM and EMC, the old (fixed) approach may be removed. - NOAA-GFDL/MOM6@eacd9d016 fix doxygen errors in surfbands_refactor branch - NOAA-GFDL/MOM6@a0d1d9982 Do not call get_Langmuir_Number if lamult is already provided via ww3 - NOAA-GFDL/MOM6@b1c341248 enclose stokes vorticity diag computations with Stokes_VF conditional - NOAA-GFDL/MOM6@824039dac enclose stokes vorticity diag computations with Stokes_VF conditional - NOAA-GFDL/MOM6@59a31f62c remove unnecessary ampersands from variable declarations - NOAA-GFDL/MOM6@dcf30ac50 merge pr1507 with dev/ncar and resolve conflicts in MOM_tidal_mixing - NOAA-GFDL/MOM6@6e94b699b disable the register of tidal mixing coeff diags when they are unavailable - NOAA-GFDL/MOM6@e3d190db3 In NUOPC cap, add ability to import fields with ungridded dimensions - NOAA-GFDL/MOM6@380a04090 Merge remote-tracking branch 'breichl/Stokes_Forces' into pstokes_wave_cpl_mehtod - NOAA-GFDL/MOM6@c5f1d442e Updating name of Stokes PGF routine to be more descriptive. - NOAA-GFDL/MOM6@a6de11c92 Remote application of Stokes tendency on thermodynamic step - NOAA-GFDL/MOM6@9fbdf11ec Finish incomplete merge in MOM_wave_interface. - NOAA-GFDL/MOM6@77084ecc9 Adding Stokes forces implementation and diags. SIS2: Replace MOM_memory.h with SIS2_memory.h - NOAA-GFDL/SIS2@55dbb3a Replace MOM_memory.h with SIS2_memory.h - NOAA-GFDL/SIS2@33589c6 Fixed the syntax of new comments in PR #173 - NOAA-GFDL/SIS2@164e404 Getting OBCs with MERGED_CONTINUITY to work - NOAA-GFDL/SIS2@d62188d OBC's for C-grid stress. - NOAA-GFDL/SIS2@c84a83b Start of ice OBCs - it compiles. - NOAA-GFDL/SIS2@2ac240a Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/SIS2@a9884b8 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/SIS2@3399a73 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg
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