Merge pull request #470 from NOAA-FIMS/242-codecov-rebase

Created get-gtest-codecov to create coverage.xml report for issue #242

.github/workflows/get-gtest-codecov.yml

@@ -0,0 +1,75 @@
+# Get GoogleTest code coverage
+name: get-gtest-codecov
+# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
+on:
+  workflow_dispatch:
+  push:
+    branches:    
+      - main
+    paths-ignore:
+      - .devcontainer
+      - .github
+      - 'LICENSE'
+      - 'README.md'
+      - 'CONTRIBUTING.md'
+      - 'Rbuildignore'
+      - '.gitignore'
+      - 'man'
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Install Ninja
+      run: sudo apt-get install ninja-build
+    - uses: r-lib/actions/setup-r@v2
+    - uses: r-lib/actions/setup-r-dependencies@v2
+      with:
+        extra-packages: any::remotes
+    - name: install local version of FIMS
+      run: remotes::install_local(upgrade = "always")
+      shell: Rscript {0}
+    - name: setup for gtest
+      run: FIMS:::setup_gtest()
+      shell: Rscript {0}
+     #note: the following configure, build and test steps could instead
+     # be run from r using FIMS::setup_and_run_gtest()
+    - name: Configure
+    # Do not run -DBUILD_DOC=OFF locally. Only run cmake -S . -B build -G Ninja locally.
+      run: |
+        cmake -S . -B build -DBUILD_DOC=OFF -G Ninja 
+        
+    - name: Build
+      run: |  
+        cmake --build build --parallel 16
+        
+    - name: Test
+      run: |
+        ctest --test-dir build --parallel 16
+    
+    - name: Install gcovr
+      run: |
+        pip install gcovr
+
+    - name: Run gcovr 
+      run: |  
+        gcovr --exclude tests/ --cobertura coverage.xml
+
+    - name: save coverage report
+      uses: actions/upload-artifact@v3
+      with:
+        name: coverage.xml
+        path: coverage.xml
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v3
+      with:
+        files: coverage.xml
+
+
+