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Port to S4 #1023

Merged
merged 116 commits into from
Oct 8, 2022
Merged

Port to S4 #1023

merged 116 commits into from
Oct 8, 2022

Commits on Dec 14, 2021

  1. Initial port to S4 for current develop branch (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  2. Modified resources for the analysis jobs on S4.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  3. Removed debug options from build scripts. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  4. Updated links in the S4 port. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  5. Force partition options to lowercase on S4 in setup scripts. (NOAA-EM… 

    …C#138)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  6. Updated S4.env to match recent changes. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  7. Changed the order of workflow module loads for NCIO. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 14, 2021
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  8. unify setup_expt*.py scripts

    @aerorahul
    aerorahul committed Dec 14, 2021
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Commits on Dec 21, 2021

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Dec 21, 2021
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Commits on Dec 23, 2021

  1. unify setup_expt*.py scripts

    @aerorahul
    aerorahul committed Dec 23, 2021
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  2. add methods to create entity and cycledef

    @aerorahul
    aerorahul committed Dec 23, 2021
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  3. Merge branch 'feature/unify-setup-expt' of https://github.com/NOAA-EM… 

    …C/global-workflow into feature/unify-setup-expt
    @aerorahul
    aerorahul committed Dec 23, 2021
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  4. Use the python3 interpretor

    @aerorahul
    aerorahul committed Dec 23, 2021
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Commits on Jan 4, 2022

  1. further clean directory creating logic

    @aerorahul
    aerorahul committed Jan 4, 2022
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Commits on Jan 11, 2022

  1. Updated S4 port with coupled changes. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 11, 2022
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  2. Added a local archive option. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 11, 2022
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  3. Updates for P8a (NOAA-EMC#538) 

    Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.

Updates include:

Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2

Closes NOAA-EMC#525
    @JessicaMeixner-NOAA @DavidHuber-NOAA
    JessicaMeixner-NOAA authored and DavidHuber-NOAA committed Jan 11, 2022
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  4. Corrected C384 forecast resources for S4. (NOAA-EMC#138)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 11, 2022
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Commits on Jan 26, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 26, 2022
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Commits on Jan 30, 2022

  1. Merge branch 'develop' into feature/unify-setup-expt

    @aerorahul
    aerorahul committed Jan 30, 2022
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  2. clean up comrot and expdir

    @aerorahul
    aerorahul committed Jan 30, 2022
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Commits on Jan 31, 2022

  1. add basic doc blocks

    @aerorahul
    aerorahul committed Jan 31, 2022
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  2. Fix separate threading for gfs and gdas forecasts. 

    Refs NOAA-EMC#610
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 31, 2022
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  3. Cleaned up forecast_predet.sh, added threading info to WCOSS envs. 

    Refs NOAA-EMC#610,NOAA-EMC#621
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jan 31, 2022
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Commits on Feb 1, 2022

  1. Added nth_fv3_gfs to env gfs if-block. 

    Refs NOAA-EMC#610 NOAA-EMC#621
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 1, 2022
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  2. Add local ROTDIR archive option. 

    Refs NOAA-EMC#624
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 1, 2022
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  3. Added default ATARDIR for each system. 

    Refs NOAA-EMC#624
    [David Huber] committed Feb 1, 2022
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  4. Fix exp setup config.base message 

    The incorrect path to config.base was displayed to the user after
the experiment directory was created. The correct paths are now
shown.

Refs: NOAA-EMC#536
    @WalterKolczynski-NOAA
    WalterKolczynski-NOAA committed Feb 1, 2022
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  5. Merge remote-tracking branch 'upstream/feature/unify-setup-expt' into… 

    … add_localarch
    [David Huber] committed Feb 1, 2022
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Commits on Feb 2, 2022

  1. Merge remote-tracking branch 'upstream/develop' into add_localarch

    [David Huber] committed Feb 2, 2022
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  2. Improved gfsmos local archiving. 

    Refs NOAA-EMC#624
    [David Huber] committed Feb 2, 2022
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Commits on Feb 3, 2022

  1. Merge remote-tracking branch 'upstream/develop' into add_localarch

    [David Huber] committed Feb 3, 2022
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  2. Don't ignore missing files in arc jobs; check for eomg logs. 

    Refs NOAA-EMC#624
    [David Huber] committed Feb 3, 2022
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  3. Restored lines deleted from setup_expt.py during merge.

    [David Huber] committed Feb 3, 2022
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Commits on Feb 8, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 8, 2022
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  2. Deleted lines accidentally retained during merge.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 8, 2022
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  3. Merge remote-tracking branch 'origin/add_localarch' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 8, 2022
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  4. Merge remote-tracking branch 'origin/fix_threading' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 8, 2022
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Commits on Feb 9, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 9, 2022
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  2. Added S4 to valid machine list in workflow_utils. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 9, 2022
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  3. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 9, 2022
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  4. Updated S4.env to include gfs/gdas threading. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 9, 2022
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Commits on Feb 10, 2022

  1. Fixed workflow build flags for S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 10, 2022
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  2. Corrected resources for S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 10, 2022
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  3. Removed unneeded ulimit command. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 10, 2022
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  4. Fixed fv3 resources for ENKF C96 forecasts. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 10, 2022
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Commits on Feb 16, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 16, 2022
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  2. Fix s4 module load order. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 16, 2022
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Commits on Feb 23, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 23, 2022
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  2. Adjusted S4 coupled forecast walltime requests. NOAA-EMC#138 

    S4 has a restriction of 5000 core-minutes.  For 384, using 35 nodes,
this comes out to ~4.46 hours.
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Feb 23, 2022
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Commits on Feb 27, 2022

  1. Specified S4 as a tier-2 machine and removed Cray NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA authored Feb 27, 2022
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Commits on Mar 4, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 4, 2022
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  2. Run the prep step in parallel on S4 NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 4, 2022
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Commits on Mar 10, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 10, 2022
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  2. Move S4-specific tiling to fcst and efcs configs. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 10, 2022
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Commits on May 10, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on May 31, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Jun 29, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Jul 21, 2022

  1. Added S4 to link_workflow.sh

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 21, 2022
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  2. Added S4 Lua modulefiles.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 21, 2022
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  3. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Aug 3, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Aug 19, 2022

  1. Update S4 environment and module file. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 19, 2022
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  2. Fixed two bugs affecting S4. NOAA-EMC#138 

    prep.sh attempts to delete files that are not present on S4 due to data
restrictions.  When this happens and $STRICT=YES, this causes an error.

fv3gfs_downstream_nems.sh looked for forecast hour of a file after
padding zeros.  On S4, this would cause an error if the
forecast hour were less than 100.
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 19, 2022
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  3. Enable overwriting default layout and threads for C384 cases. NOAA-EM… 

    …C#138
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 19, 2022
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  4. Added S4 to the rocoto workflow setup scripts. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 19, 2022
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Commits on Aug 24, 2022

  1. Added coupled IC information for S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 24, 2022
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  2. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Aug 25, 2022

  1. Corrected aerosol inputs location on S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Aug 25, 2022
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Commits on Sep 7, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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Commits on Sep 8, 2022

  1. Updated S4 environment script. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 8, 2022
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  2. Added nsstbufr file check to support S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 8, 2022
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Commits on Sep 12, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
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  2. Removed S4 info from the NCO config.fv3 NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 12, 2022
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  3. Fixed spacing NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 12, 2022
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  4. Added notes to S4 resources in config.resources. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 12, 2022
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  5. Fixed update that wasn't merged properly to fv3gfs_downstream_nems.sh N… 

    …OAA-EMC#138
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 12, 2022
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  6. Removed eupd walltime change for S4. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 12, 2022
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Commits on Sep 13, 2022

  1. Removed unnecessary unset from fcs* configs. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 13, 2022
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  2. Enabled nsstbufr and acft prepbufr creation global options. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 13, 2022
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Commits on Sep 14, 2022

  1. Moved S4-specific fcst resources to fix S2S forecasts. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 14, 2022
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Commits on Sep 19, 2022

  1. Cleaned up comments NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  2. Updated supported machines list NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  3. Remove S4 reference to S2S+. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  4. Added S2S note for S4 in the README. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  5. Apply lint fixes. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  6. Added nsstbufr, acftbufr fix to ENKF scripts. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  7. Apply lint fixes. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  8. Address linter warnings. NOAA-EMC#138

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    DavidHuber-NOAA committed Sep 19, 2022
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  9. Fixed shellcheck directive. Address linter errors. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  10. Fixed linter warnings. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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  11. Fixed shellcheck error. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 19, 2022
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Commits on Sep 21, 2022

  1. Removed S4 resolution restrictions. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 21, 2022
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  2. Addressed linter warnings in S4.env. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 21, 2022
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  3. Addressed linter warnings in S4.env. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 21, 2022
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Commits on Sep 23, 2022

  1. Shortened DO_MAKE to MAKE for prepbufr files. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 23, 2022
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  2. Cleaned up S4.env and converted it to bash. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 23, 2022
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  3. Renamed DO_MAKEPREPBUFR to MAKE_PREPBUFR. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 23, 2022
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  4. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 23, 2022
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  5. Address shellcheck warning in prep.sh. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 23, 2022
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Commits on Sep 27, 2022

  1. Remove S4-specific optimizations. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 27, 2022
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  2. Removed S4-specific wtime request for gdaseobs. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 27, 2022
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  3. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 27, 2022
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  4. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 27, 2022
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  5. Updated S4 host file with supported resolutions. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Sep 27, 2022
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Commits on Oct 3, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 3, 2022
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  2. Updates S4 env and host files. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 3, 2022
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  3. Updates S4 hosts file. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 3, 2022
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  4. Address lint warnings. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 3, 2022
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Commits on Oct 4, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 4, 2022
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  2. Added S4 to link_workflow.sh. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 4, 2022
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Commits on Oct 5, 2022

  1. Updated gfs_utils hash to include S4 port. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 5, 2022
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  2. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 5, 2022
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Commits on Oct 7, 2022

  1. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 7, 2022
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  2. Merge remote-tracking branch 'upstream/develop' into port_2_s4

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 7, 2022
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  3. Updated to include the new prepobs package. NOAA-EMC#138

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Oct 7, 2022
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