1.0.2

.Rbuildignore

@@ -22,4 +22,5 @@ R/olm_functions.R
 vignettes/download_functions.Rmd
 vignettes/epa_download.Rmd
 vignettes/protected_datasets.Rmd
-inst/extdata/air.2m
+inst/extdata/air.2m
+LICENSE.md

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: amadeus
 Title: A Machine for Data, Environments, and User Setup for Common Environmental and Climate Health Datasets
-Version: 1.0.1
+Version: 1.0.2
 Authors@R: c(
     person(given = "Mitchell", family = "Manware", role = c("aut", "ctb"), comment = c(ORCID = "0009-0003-6440-6106")),
     person(given = "Insang", family = "Song", role = c("aut", "ctb"), comment = c(ORCID = "0000-0001-8732-3256")),

LICENSE

@@ -1,21 +1,2 @@
-MIT License
-
-Copyright (c) 2024 Spatiotemporal Exposures and Toxicology Group
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
+YEAR: 2024
+COPYRIGHT HOLDER: Spatiotemporal Exposures and Toxicology Group

LICENSE.md

@@ -0,0 +1,21 @@
+# MIT License
+
+Copyright (c) 2024 Spatiotemporal Exposures and Toxicology Group
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

R/calculate_covariates.R

@@ -1136,7 +1136,7 @@ calc_temporal_dummies <-
 #' @author Insang Song
 #' @references
 #' \insertRef{messier2012integrating}{amadeus}
-#' \insertRef{web_sedctutorial}{amadeus}
+#' \insertRef{web_sedctutorial_package}{amadeus}
 #' @examples
 #' library(terra)
 #' library(sf)

README.md

@@ -58,7 +58,7 @@ Utilize [Issues](https://github.com/NIEHS/amadeus/issues) to notify the authors
 | [US EPA National Emissions Inventory (NEI)](https://www.epa.gov/air-emissions-inventories) | CSV | Emissions |
 | [US EPA Toxic Release Inventory (TRI) Program](https://www.epa.gov/toxics-release-inventory-tri-program/tri-basic-data-files-calendar-years-1987-present) | CSV | Chemicals<br>Pollution |
 | [USGS[^6] Global Multi-resolution Terrain Elevation Data (GMTED2010)](https://www.usgs.gov/coastal-changes-and-impacts/gmted2010) | ESRI ASCII Grid | Elevation |
-| [USGS National Hydrography Dataset (NHD)](https://www.sciencebase.gov/catalog/item/4f5545cce4b018de15819ca9) | Geopackage<br>Geodatabase | Hydrography |
+| [USGS National Hydrography Dataset (NHD)](https://www.usgs.gov/national-hydrography) | Geopackage<br>Geodatabase | Hydrography |
 
 See the "[download_data](https://niehs.github.io/amadeus/articles/download_functions.html)" vignette for a detailed description of source-specific download functions.
 

inst/REFERENCES.bib

@@ -376,6 +376,10 @@ @misc{web_sedctutorial
 	author = {Corinne Wiesner},
 	url = {https://mserre.sph.unc.edu/BMElab_web/SEDCtutorial/index.html}
 }
+@misc{web_sedctutorial_package,
+	title = {Euclidean Sum of Exponentially Decaying Contributions Tutorial},
+	author = {Corinne Wiesner}
+}
 @misc{web_ropensci,
 	title        = {Packages},
 	publisher    = {rOpenSci},
@@ -908,7 +912,7 @@ @inproceedings{abstract_simoes2021rstac
 @misc{data_usgs2023nhd,
   author = {{U.S. Geological Survey}},
   title = {{National Hydrography Dataset (NHD) -- USGS National Map Downloadable Data Collection}},
-  url = {https://www.sciencebase.gov/catalog/item/4f5545cce4b018de15819ca9},
+  url = {https://www.usgs.gov/national-hydrography},
   year = {2023}
 }