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estimate_betas should allow alternative penalties #29

Open
ericbair-sciome opened this issue Nov 12, 2023 · 4 comments
Open

estimate_betas should allow alternative penalties #29

ericbair-sciome opened this issue Nov 12, 2023 · 4 comments
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enhancement New feature or request version ? Uncertain when this feature will be implemented

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@ericbair-sciome
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Currently estimate_betas uses an L1 lasso penalty based on glmnet. We should allow alternative penalties such as ridge regression or SCAD.
@ericbair-sciome ericbair-sciome added enhancement New feature or request version ? Uncertain when this feature will be implemented labels Nov 12, 2023
@kyle-messier
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combine with issue #24 @ericbair-sciome @sciome-bot

@ericbair-sciome
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Issue 24 is slightly different because we want to investigate it and possibly make the relaxed lasso the default if it outperforms the regular lasso. For this issue, we just want to give users the option, and that doesn't require any experimentation.

@kyle-messier
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ok, I moved #24 up the backlog then.

@kyle-messier
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@ericbair-sciome @sciome-bot @sigmafelix

You can link an issue with hash-tag-followed-by-the-number. Kind of like using @ to tag a person. e.g. #24

sciome-bot pushed a commit that referenced this issue Jan 13, 2024
@shail-choksi
Pull request #31: Fixed merge issues caused by linting. Fixed tests
9b10201 
Merge in STAT/prestogp from master to to-git

Squashed commit of the following:

commit db6cd4f6f86e760ee8393adf224cd0231ccde8cf
Merge: 55607e2 7da2588
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 12:11:56 2024 -0500

    Pull request #29: Fixed some bugs caused by the linter

    Merge in STAT/prestogp from eb-dev to master

    * commit '7da2588abba4491c1ff490de95e834d00f5df88e':
      Fixed some bugs caused by the linter

commit 7da2588abba4491c1ff490de95e834d00f5df88e
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 01:37:58 2024 -0500

    Fixed some bugs caused by the linter

commit 55607e291477d174b8323bf258a8e9aa5c4db84c
Merge: c7ed481 81b675d
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:37:55 2024 -0500

    Pull request #28: Final linting fixes

    Merge in STAT/prestogp from build-workflow to master

    * commit '81b675dda9b57f2a362c34876364adf5bcf45560':
      Fix remaining linting issues
      Fix all indentation errors
      Add indentation_linter configuration to lintr config file

commit 81b675d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:36:05 2024 -0500

    Fix remaining linting issues

commit 06673a4
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:23:11 2024 -0500

    Fix all indentation errors

commit c7ed481479c2ca5a4fc111f429affd01b6c3ce53
Merge: 723c3eb 7bcfa1a
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:02:59 2024 -0500

    Pull request #27: Lintr fixes. Added release and sanitizer actions

    Merge in STAT/prestogp from build-workflow to master

    * commit '7bcfa1aca78cc6b994cc0227c083357c58d50ca0': (21 commits)
      Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file
      More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter
      WIP: Fix linter warnings for 1:nrow, 1:ncol and 1:length. Increase line length to 160 chars
      Don't build vignettes during the release action
      Move release action file to correct directory
      Add release action
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      Add missing dependency in Namespace/Description
      Remove unneeded exports from NAMESPACE
      Add missing comma in Imports section of DESCRIPTION
      Add missing comma in imports section of DESCRIPTION
      Rerun auto-formatter
      WIP - linting
      Add ignore rules for .lintr and .github for R build
      remove linter options from lint action as we have added .lintr project file. Fix all vector_logic_linter warnings
      Remove line length linter to see the remaining errors/warnings
      workaround for lintr bug: REditorSupport/languageserver#89
      Run auto-lint on vscode
      enable linting on build-workflow
      Add missing imports in DESCRIPTION
      ...

commit 29d82cd
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:40:17 2024 -0500

    Add indentation_linter configuration to lintr config file

commit 7bcfa1a
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:16:01 2024 -0500

    Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file

commit b6df473
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 17:54:50 2024 -0500

    More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter

commit 6f6f91d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 17:32:12 2024 -0500

    WIP: Fix linter warnings for 1:nrow, 1:ncol and 1:length. Increase line length to 160 chars

commit 2db2e19
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:48:59 2024 -0500

    Don't build vignettes during the release action

commit c539223
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:39:52 2024 -0500

    Move release action file to correct directory

commit f83df2b
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:36:03 2024 -0500

    Add release action

commit c84e159
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:04:36 2024 -0500

    Reorder imports in RcppExports file

commit 0460202
Merge: 245eaa3 43ae272
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 15:48:30 2024 -0500

    Merge branch 'build-workflow' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP into build-workflow

commit 245eaa3
Merge: 5355e24 c060815
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 15:47:42 2024 -0500

    Merge branch 'main' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP into build-workflow

commit c060815
Merge: 731da76 6d69b69
Author: {SET}group <127860447+Spatiotemporal-Exposures-and-Toxicology@users.noreply.github.com>
Date:   Thu Jan 11 16:02:52 2024 -0500

    Merge pull request #44 from Spatiotemporal-Exposures-and-Toxicology/main-sciome

    Sciome Update 1/10/2024

commit 6d69b69
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Jan 11 14:39:39 2024 -0500

    Add missing dependency in Namespace/Description

commit bdf52c6
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Jan 11 14:30:38 2024 -0500

    Remove unneeded exports from NAMESPACE

commit 06918b0
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Jan 11 14:15:45 2024 -0500

    Add missing comma in Imports section of DESCRIPTION

... and 13 more commits
sciome-bot pushed a commit that referenced this issue Jan 14, 2024
@shail-choksi
Pull request #34: Fix tolerance and expected values for tests
8ffb20b 
Merge in STAT/prestogp from master to to-git

Squashed commit of the following:

commit 439790cb0d96d85e80a3782ad533eee78afe41dc
Merge: f4af0d1 56f881f
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sun Jan 14 10:58:49 2024 -0500

    Pull request #32: Fixed some testthat issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '56f881f96a0e55e60bca3c8a840ec31291665594':
      Fixed some testthat issues

commit 56f881f96a0e55e60bca3c8a840ec31291665594
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 14:05:12 2024 -0500

    Fixed some testthat issues

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Merge: db6cd4f ee193de
Author: sciome-bot <software.tools@sciome.com>
Date:   Sat Jan 13 12:37:28 2024 -0500

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commit db6cd4f6f86e760ee8393adf224cd0231ccde8cf
Merge: 55607e2 7da2588
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 12:11:56 2024 -0500

    Pull request #29: Fixed some bugs caused by the linter

    Merge in STAT/prestogp from eb-dev to master

    * commit '7da2588abba4491c1ff490de95e834d00f5df88e':
      Fixed some bugs caused by the linter

commit 7da2588abba4491c1ff490de95e834d00f5df88e
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 01:37:58 2024 -0500

    Fixed some bugs caused by the linter

commit 55607e291477d174b8323bf258a8e9aa5c4db84c
Merge: c7ed481 81b675d
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:37:55 2024 -0500

    Pull request #28: Final linting fixes

    Merge in STAT/prestogp from build-workflow to master

    * commit '81b675dda9b57f2a362c34876364adf5bcf45560':
      Fix remaining linting issues
      Fix all indentation errors
      Add indentation_linter configuration to lintr config file

commit 81b675d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:36:05 2024 -0500

    Fix remaining linting issues

commit 06673a4
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:23:11 2024 -0500

    Fix all indentation errors

commit c7ed481479c2ca5a4fc111f429affd01b6c3ce53
Merge: 723c3eb 7bcfa1a
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:02:59 2024 -0500

    Pull request #27: Lintr fixes. Added release and sanitizer actions

    Merge in STAT/prestogp from build-workflow to master

    * commit '7bcfa1aca78cc6b994cc0227c083357c58d50ca0': (21 commits)
      Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file
      More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter
      WIP: Fix linter warnings for 1:nrow, 1:ncol and 1:length. Increase line length to 160 chars
      Don't build vignettes during the release action
      Move release action file to correct directory
      Add release action
      Reorder imports in RcppExports file
      Add missing dependency in Namespace/Description
      Remove unneeded exports from NAMESPACE
      Add missing comma in Imports section of DESCRIPTION
      Add missing comma in imports section of DESCRIPTION
      Rerun auto-formatter
      WIP - linting
      Add ignore rules for .lintr and .github for R build
      remove linter options from lint action as we have added .lintr project file. Fix all vector_logic_linter warnings
      Remove line length linter to see the remaining errors/warnings
      workaround for lintr bug: REditorSupport/languageserver#89
      Run auto-lint on vscode
      enable linting on build-workflow
      Add missing imports in DESCRIPTION
      ...

commit 29d82cd
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:40:17 2024 -0500

    Add indentation_linter configuration to lintr config file

commit 7bcfa1a
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:16:01 2024 -0500

    Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file

commit b6df473
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 17:54:50 2024 -0500

    More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter

commit 6f6f91d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 17:32:12 2024 -0500

    WIP: Fix linter warnings for 1:nrow, 1:ncol and 1:length. Increase line length to 160 chars

commit 2db2e19
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:48:59 2024 -0500

    Don't build vignettes during the release action

commit c539223
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:39:52 2024 -0500

    Move release action file to correct directory

commit f83df2b
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:36:03 2024 -0500

    Add release action

commit c84e159
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 16:04:36 2024 -0500

    Reorder imports in RcppExports file

commit 0460202
Merge: 245eaa3 43ae272
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 15:48:30 2024 -0500

    Merge branch 'build-workflow' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP into build-workflow

commit 245eaa3
Merge: 5355e24 c060815
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 15:47:42 2024 -0500

    Merge branch 'main' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP into build-workflow

commit c060815
Merge: 731da76 6d69b69
Author: {SET}group <127860447+Spatiotemporal-Exposures-and-Toxicology@users.noreply.github.com>
Date:   Thu Jan 11 16:02:52 2024 -0500

    Merge pull request #44 from Spatiotemporal-Exposures-and-Toxicology/main-sciome

    Sciome Update 1/10/2024

... and 13 more commits
sciome-bot pushed a commit that referenced this issue Feb 8, 2024
@shail-choksi
Pull request #37: Added documentation. Added RandomFields data sets. …
076c0a1 
…Fixed R CMD issues

Merge in STAT/prestogp from master to to-git

Squashed commit of the following:

commit 7e330f30a659c579a3f291bc65c7918b9859c619
Merge: 13a6f44 f49d076
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Feb 7 23:25:05 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit f49d0769a892df5dd711a2f8ebe08a3f9ca7af7b
Merge: 439790c 59baf72
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Feb 7 23:19:54 2024 -0500

    Pull request #35: Eb dev

    Merge in STAT/prestogp from eb-dev to master

    * commit '59baf720737abe59a04c98705c950ef1c7b63321':
      Fixed some documentation issues
      Removed C++11 compiler flag
      Added RandomFields data sets to PrestoGP
      Added knitr to Suggests in DESCRIPTION
      Documentation, R-cmd-check fixes, binomial regression

commit 59baf720737abe59a04c98705c950ef1c7b63321
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Feb 6 17:49:48 2024 -0500

    Fixed some documentation issues

commit d857d8b367e3b46581677c4925ba8617f462c4d5
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 1 02:16:44 2024 -0500

    Removed C++11 compiler flag

commit 662907d9e98a20ad06602c0dfe7e81b6390e3485
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 15:36:37 2024 -0500

    Added RandomFields data sets to PrestoGP

commit cf2aadb50ecebd9e2f4401493da6901f10ee993a
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 13:40:24 2024 -0500

    Added knitr to Suggests in DESCRIPTION

commit ef5f2c9145d481e4e24a98792913830d449cba86
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 01:31:53 2024 -0500

    Documentation, R-cmd-check fixes, binomial regression

commit 13a6f449d324e19f61d7e29797fc23c65ec020b8
Merge: 439790c 8ffb20b
Author: sciome-bot <software.tools@sciome.com>
Date:   Sun Jan 14 11:46:17 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 439790cb0d96d85e80a3782ad533eee78afe41dc
Merge: f4af0d1 56f881f
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sun Jan 14 10:58:49 2024 -0500

    Pull request #32: Fixed some testthat issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '56f881f96a0e55e60bca3c8a840ec31291665594':
      Fixed some testthat issues

commit 56f881f96a0e55e60bca3c8a840ec31291665594
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 14:05:12 2024 -0500

    Fixed some testthat issues

commit f4af0d1be3490dd2edd4f4fd0ae97bf729464748
Merge: db6cd4f ee193de
Author: sciome-bot <software.tools@sciome.com>
Date:   Sat Jan 13 12:37:28 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit db6cd4f6f86e760ee8393adf224cd0231ccde8cf
Merge: 55607e2 7da2588
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 12:11:56 2024 -0500

    Pull request #29: Fixed some bugs caused by the linter

    Merge in STAT/prestogp from eb-dev to master

    * commit '7da2588abba4491c1ff490de95e834d00f5df88e':
      Fixed some bugs caused by the linter

commit 7da2588abba4491c1ff490de95e834d00f5df88e
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 01:37:58 2024 -0500

    Fixed some bugs caused by the linter

commit 55607e291477d174b8323bf258a8e9aa5c4db84c
Merge: c7ed481 81b675d
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:37:55 2024 -0500

    Pull request #28: Final linting fixes

    Merge in STAT/prestogp from build-workflow to master

    * commit '81b675dda9b57f2a362c34876364adf5bcf45560':
      Fix remaining linting issues
      Fix all indentation errors
      Add indentation_linter configuration to lintr config file

commit 81b675d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:36:05 2024 -0500

    Fix remaining linting issues

commit 06673a4
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:23:11 2024 -0500

    Fix all indentation errors

commit c7ed481479c2ca5a4fc111f429affd01b6c3ce53
Merge: 723c3eb 7bcfa1a
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:02:59 2024 -0500

    Pull request #27: Lintr fixes. Added release and sanitizer actions

    Merge in STAT/prestogp from build-workflow to master

    * commit '7bcfa1aca78cc6b994cc0227c083357c58d50ca0': (21 commits)
      Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file
      More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter
      WIP: Fix linter warnings for 1:nrow, 1:ncol and 1:length. Increase line length to 160 chars
      Don't build vignettes during the release action
      Move release action file to correct directory
      Add release action
      Reorder imports in RcppExports file
      Add missing dependency in Namespace/Description
      Remove unneeded exports from NAMESPACE
      Add missing comma in Imports section of DESCRIPTION
      Add missing comma in imports section of DESCRIPTION
      Rerun auto-formatter
      WIP - linting
      Add ignore rules for .lintr and .github for R build
      remove linter options from lint action as we have added .lintr project file. Fix all vector_logic_linter warnings
      Remove line length linter to see the remaining errors/warnings
      workaround for lintr bug: REditorSupport/languageserver#89
      Run auto-lint on vscode
      enable linting on build-workflow
      Add missing imports in DESCRIPTION
      ...

commit 29d82cd
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:40:17 2024 -0500

    Add indentation_linter configuration to lintr config file

commit 7bcfa1a
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 18:16:01 2024 -0500

    Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file

commit b6df473
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 17:54:50 2024 -0500

    More lintr fixes for 1:length, 1:nrow and line length. Disabled object_length_linter

... and 21 more commits
sciome-bot added a commit that referenced this issue Feb 8, 2024
@sciome-bot
Pull request #39: Removed test vignette, fixed lint issues
95fef8c 
Merge in STAT/prestogp from master to to-git

Squashed commit of the following:

commit bab8357d1f3cdc45ab38110355cc6d106dba8440
Merge: 55c0e8e 5394772
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:19:24 2024 -0500

    Pull request #38: Removed vignette, fixed lint issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '53947729624b47fa1920ef39bd23d86f6e5cd7b7':
      Removed vignette, fixed lint issues

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Merge: 7e330f3 076c0a1
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:18:48 2024 -0500

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Merge: b431df4 7e330f3
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:07:54 2024 -0500

    Resolved merge conflict

commit b431df45c0f80a54451536033c355b47620f3077
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 13:56:38 2024 -0500

    Removed vignette, fixed lint issues

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Merge: 13a6f44 f49d076
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Feb 7 23:25:05 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit f49d0769a892df5dd711a2f8ebe08a3f9ca7af7b
Merge: 439790c 59baf72
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Feb 7 23:19:54 2024 -0500

    Pull request #35: Eb dev

    Merge in STAT/prestogp from eb-dev to master

    * commit '59baf720737abe59a04c98705c950ef1c7b63321':
      Fixed some documentation issues
      Removed C++11 compiler flag
      Added RandomFields data sets to PrestoGP
      Added knitr to Suggests in DESCRIPTION
      Documentation, R-cmd-check fixes, binomial regression

commit 59baf720737abe59a04c98705c950ef1c7b63321
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Feb 6 17:49:48 2024 -0500

    Fixed some documentation issues

commit d857d8b367e3b46581677c4925ba8617f462c4d5
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 1 02:16:44 2024 -0500

    Removed C++11 compiler flag

commit 662907d9e98a20ad06602c0dfe7e81b6390e3485
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 15:36:37 2024 -0500

    Added RandomFields data sets to PrestoGP

commit cf2aadb50ecebd9e2f4401493da6901f10ee993a
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 13:40:24 2024 -0500

    Added knitr to Suggests in DESCRIPTION

commit ef5f2c9145d481e4e24a98792913830d449cba86
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 01:31:53 2024 -0500

    Documentation, R-cmd-check fixes, binomial regression

commit 13a6f449d324e19f61d7e29797fc23c65ec020b8
Merge: 439790c 8ffb20b
Author: sciome-bot <software.tools@sciome.com>
Date:   Sun Jan 14 11:46:17 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 439790cb0d96d85e80a3782ad533eee78afe41dc
Merge: f4af0d1 56f881f
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sun Jan 14 10:58:49 2024 -0500

    Pull request #32: Fixed some testthat issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '56f881f96a0e55e60bca3c8a840ec31291665594':
      Fixed some testthat issues

commit 56f881f96a0e55e60bca3c8a840ec31291665594
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 14:05:12 2024 -0500

    Fixed some testthat issues

commit f4af0d1be3490dd2edd4f4fd0ae97bf729464748
Merge: db6cd4f ee193de
Author: sciome-bot <software.tools@sciome.com>
Date:   Sat Jan 13 12:37:28 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit db6cd4f6f86e760ee8393adf224cd0231ccde8cf
Merge: 55607e2 7da2588
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 12:11:56 2024 -0500

    Pull request #29: Fixed some bugs caused by the linter

    Merge in STAT/prestogp from eb-dev to master

    * commit '7da2588abba4491c1ff490de95e834d00f5df88e':
      Fixed some bugs caused by the linter

commit 7da2588abba4491c1ff490de95e834d00f5df88e
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sat Jan 13 01:37:58 2024 -0500

    Fixed some bugs caused by the linter

commit 55607e291477d174b8323bf258a8e9aa5c4db84c
Merge: c7ed481 81b675d
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Fri Jan 12 19:37:55 2024 -0500

    Pull request #28: Final linting fixes

    Merge in STAT/prestogp from build-workflow to master

    * commit '81b675dda9b57f2a362c34876364adf5bcf45560':
      Fix remaining linting issues
      Fix all indentation errors
      Add indentation_linter configuration to lintr config file

commit 81b675d
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:36:05 2024 -0500

    Fix remaining linting issues

commit 06673a4
Author: sciome-bot <software.tools@sciome.com>
Date:   Fri Jan 12 19:23:11 2024 -0500

    Fix all indentation errors

... and 25 more commits
@kyle-messier kyle-messier mentioned this issue Sep 5, 2024
Closed
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