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Documentation needed for core PrestoGP functions #19

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ericbair-sciome opened this issue Nov 12, 2023 · 1 comment · Fixed by #51
Closed

Documentation needed for core PrestoGP functions #19

ericbair-sciome opened this issue Nov 12, 2023 · 1 comment · Fixed by #51
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documentation Improvements or additions to documentation version 1.0 Features that should be included in the initial PrestoGP release

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@ericbair-sciome
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The documentation/help files for PrestoGP have not been updated since the beginning of the project. Many of them are outdated or non-existent. I will work on adding documentation for the core PrestoGP multivariate functions.
@ericbair-sciome ericbair-sciome added the documentation Improvements or additions to documentation label Nov 12, 2023
@ericbair-sciome ericbair-sciome self-assigned this Nov 12, 2023
@ericbair-sciome ericbair-sciome added the version 1.0 Features that should be included in the initial PrestoGP release label Nov 12, 2023
sciome-bot pushed a commit that referenced this issue Dec 28, 2023
@shail-choksi
Pull request #19: Added missing imports and ran auto-formatter in vsc…
961880a 
…ode for R and C++

Merge in STAT/prestogp from master to to-git

Squashed commit of the following:

commit 710520c
Merge: d2a2e3a 11771e4
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Thu Dec 28 14:09:40 2023 -0500

    Pull request #18: Added missing imports and ran auto-formatter in vscode for R and C++

    Merge in STAT/prestogp from build-workflow to master

    * commit '11771e4ccbd6311aa35334c5ab4b7e4299a8db56':
      Added missing imports
      Ran auto-formatter/linter for R and C++ in vscode. Added some missing imports

commit 11771e4
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 14:07:28 2023 -0500

    Added missing imports

commit 73aed75
Merge: 7c0bbfe d2a2e3a
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:58:37 2023 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp into build-workflow

commit d2a2e3a
Merge: bea8382 85517e7
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:57:14 2023 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit bea8382
Merge: 17f5284 1e4361d
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:55:26 2023 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 7c0bbfe
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:52:27 2023 -0500

    Ran auto-formatter/linter for R and C++ in vscode. Added some missing imports

commit 85517e7
Merge: 17f5284 2c9c2ed
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Thu Dec 28 13:12:00 2023 -0500

    Pull request #16: Add UBSAN/ASAN sanitizers

    Merge in STAT/prestogp from build-workflow to master

    * commit '2c9c2ede3d40e6e5af24b38a6acfc2dfb2994975':
      Add USAN/ASAN pipeline
      Pull request #14: Additional Testing
      Additional Testing
      Add UBSAN/ASAN sanitizers

commit 2c9c2ed
Merge: 6af43f4 56cdbf2
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:11:14 2023 -0500

    Merge branch 'to-git' of ssh://sciome-bot/stat/prestogp into build-workflow

commit 6af43f4
Merge: e530819 17f5284
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:07:50 2023 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp into build-workflow

commit e530819
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Dec 28 13:06:21 2023 -0500

    Add USAN/ASAN pipeline

commit 17f5284
Merge: ea78ffa 895100d
Author: Eric Bair <eric.bair@sciome.com>
Date:   Fri Dec 1 10:49:09 2023 -0500

    Pull request #12: Testing

    Merge in STAT/prestogp from testing to master

    * commit '895100db78d89c5082ddfcf1411dad69bdf1b6c5':
      Fixed another sparseNN bug and updated tests
      Fixed a bug in SparseNN
      Added more likelihood and maxmin ordering tests

commit 895100d
Merge: 7f3ca3c fb060ff
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Nov 29 17:02:10 2023 -0500

    Merge branch 'to-git' of http://192.168.167.103:7990/bitbucket/scm/stat/prestogp into testing

    Conflicts:
    	DESCRIPTION
    	man/prestogp_fit-PrestoGPModel-method.Rd
    	tests/testthat/test-Log_Likelihood.R

    Fixed merge conflicts.

commit 7f3ca3c
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Nov 29 16:43:40 2023 -0500

    Fixed another sparseNN bug and updated tests

commit 1ca9586
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Nov 28 18:40:36 2023 -0500

    Fixed a bug in SparseNN

commit 80a9818
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Nov 21 17:49:19 2023 -0500

    Added more likelihood and maxmin ordering tests

commit 4822fbc
Author: sciome-bot <software.tools@sciome.com>
Date:   Mon Nov 20 15:01:37 2023 -0500

    Add UBSAN/ASAN sanitizers

commit ea78ffa
Merge: 286ba5d 53e2b0d
Author: sciome-bot <software.tools@sciome.com>
Date:   Mon Nov 20 12:41:08 2023 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 286ba5d
Merge: f52ebbb 84fd72f
Author: sciome-bot <software.tools@sciome.com>
Date:   Tue Nov 14 13:11:48 2023 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit f52ebbb
Merge: 4e0e1ec 2dd74a2
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Nov 14 13:10:51 2023 -0500

    Pull request #9: Testing

    * commit '2dd74a21380be960918b6067abec8ec163721853':
      Added a simulation file for testing
      Fixed likelihood function and added additional tests
      Fixed likelihood function and added additional test

commit 2dd74a2
Author: Eric Bair <eric.bair@sciome.com>
Date:   Mon Nov 13 19:17:43 2023 -0500

    Added a simulation file for testing

... and 3 more commits
@ericbair-sciome ericbair-sciome linked a pull request Feb 8, 2024 that will close this issue
Pull request #37: Added documentation. Added RandomFields data sets. Fixed R CMD issues #51
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@ericbair-sciome
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There is documentation for all user-facing functions in the latest release. Please let me know if anything is incomplete or unclear (or if you see any typos or broken links).

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