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Remove dependency on sysreqs to fix sanitizer action
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Squashed commit of the following:

commit 4aa13ad28f920ddad21f1fef99900173f12f4827
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Apr 24 20:16:19 2024 -0400

    Remove dependency on sysreqs to fix sanitizer action.

commit 7fad5a6b6d3f6e8a73565e359601c2f8a4dd43a7
Merge: 3f3c9e3 df836b7
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Apr 24 20:12:09 2024 -0400

    Merge branch 'main-sciome' of sciome-bot-git:NIEHS/PrestoGP

commit 3f3c9e3ca731faf18111e29d8245609b2b45e391
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Apr 24 17:17:41 2024 -0400

    Observation-level lod, imputation tests, updated README

    Squashed commit of the following:

    commit 9dfcef34dd108dad30ec5cb72a66308073f5d1a2
    Merge: 33b0560 68671e6
    Author: Eric Bair <eric.bair@sciome.com>
    Date:   Tue Apr 23 16:41:15 2024 -0400

        Merge branch 'master' of http://192.168.167.103:7990/bitbucket/scm/stat/prestogp into eb-dev

        Conflicts:
        	README.md

    commit 33b0560503970cbd4410e2750a157561cc2a2994
    Author: Eric Bair <eric.bair@sciome.com>
    Date:   Tue Apr 23 03:05:12 2024 -0400

        Observation-level lod, imputation tests, updated README

commit 68671e6eadf74fca86937c3363ba2f6f606fa39c
Merge: 00171d7 7fe8997
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Apr 10 09:51:12 2024 -0400

    Merge branch 'main-sciome' of sciome-bot-git:NIEHS/PrestoGP

commit 00171d7caa5c0eb0678401379566a722ba6ca7e7
Merge: cb9236b e0c9039
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Tue Apr 9 17:17:39 2024 -0400

    Pull request #44: Revert execute permissions on all files

    Merge in STAT/prestogp from shail-dev-2 to master

    * commit 'e0c90391f290dd2f6ebe62f6a69db8ec006c1872':
      chmod changes
      Implement imputation beta

commit e0c90391f290dd2f6ebe62f6a69db8ec006c1872
Merge: b8f91fd 05e7dfb
Author: sciome-bot <software.tools@sciome.com>
Date:   Tue Apr 9 17:16:29 2024 -0400

    Merge branch 'to-git' of ssh://sciome-bot/stat/prestogp into shail-dev-2

commit b8f91fdaa970f2eff4608cd71fdf8d7a6e79588f
Author: sciome-bot <software.tools@sciome.com>
Date:   Tue Apr 9 17:10:53 2024 -0400

    chmod changes

commit cb9236b8adab059b338ef4d06c5fc1f4e262a6d8
Merge: cae8439 218a18a
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Apr 9 17:03:10 2024 -0400

    Pull request #42: Fixed a documentation issue

    Merge in STAT/prestogp from eb-dev to master

    * commit '218a18a6cd2891c7c4975e408f7308243c11abbf':
      Fixed a documentation issue

commit 218a18a6cd2891c7c4975e408f7308243c11abbf
Author: Eric Bair <eric.bair@sciome.com>
Date:   Mon Apr 8 02:18:24 2024 -0400

    Fixed a documentation issue

commit cae8439517a38f41ff826018ce1d4719365695c1
Merge: c15c519 6bafe5c
Author: Eric Bair <eric.bair@sciome.com>
Date:   Fri Apr 5 16:38:34 2024 -0400

    Pull request #40: Imputation beta

    Merge in STAT/prestogp from eb-dev to master

    * commit '6bafe5cf9d5574074bdcb0288e4b48efb87a8840':
      Imputation beta implemented
      Updated version number

commit 6bafe5cf9d5574074bdcb0288e4b48efb87a8840
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Apr 4 00:17:45 2024 -0400

    Imputation beta implemented

commit 1f4bcc714fbd43bfbe315a61ad03120c8fbc07ae
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sun Mar 17 16:36:13 2024 -0400

    Updated version number

commit c15c519e6a81e7b899090e500cc278c795548ac2
Merge: 350b236 bab8357
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:25:12 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit 350b236ba0b77dfc5056e9e53b00f05cbb1cc4d0
Merge: 55c0e8e 95fef8c
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:24:34 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit bab8357d1f3cdc45ab38110355cc6d106dba8440
Merge: 55c0e8e 5394772
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:19:24 2024 -0500

    Pull request #38: Removed vignette, fixed lint issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '53947729624b47fa1920ef39bd23d86f6e5cd7b7':
      Removed vignette, fixed lint issues

commit 55c0e8e5ed2e189876c39d9e2337b51020b6505b
Merge: 7e330f3 076c0a1
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:18:48 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 53947729624b47fa1920ef39bd23d86f6e5cd7b7
Merge: b431df4 7e330f3
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:07:54 2024 -0500

    Resolved merge conflict

commit b431df45c0f80a54451536033c355b47620f3077
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 13:56:38 2024 -0500

    Removed vignette, fixed lint issues

commit 7e330f30a659c579a3f291bc65c7918b9859c619
Merge: 13a6f44 f49d076
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Feb 7 23:25:05 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit f49d0769a892df5dd711a2f8ebe08a3f9ca7af7b
Merge: 439790c 59baf72
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Feb 7 23:19:54 2024 -0500

    Pull request #35: Eb dev

    Merge in STAT/prestogp from eb-dev to master

    * commit '59baf720737abe59a04c98705c950ef1c7b63321':
      Fixed some documentation issues
      Removed C++11 compiler flag
      Added RandomFields data sets to PrestoGP
      Added knitr to Suggests in DESCRIPTION
      Documentation, R-cmd-check fixes, binomial regression

... and 37 more commits
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shail-choksi committed Apr 25, 2024
1 parent df836b7 commit d1dd01b
Showing 1 changed file with 2 additions and 10 deletions.
12 changes: 2 additions & 10 deletions .github/workflows/sanitizers.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -60,12 +60,8 @@ jobs:
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
sudo apt-get install -y libcurl4-openssl-dev
- name: Install dependencies
run: |
Expand Down Expand Up @@ -138,12 +134,8 @@ jobs:
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
sudo apt-get install -y libcurl4-openssl-dev
- name: Install dependencies
run: |
Expand Down

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