Skip to content

Commit

Permalink
Pull request #43: Fix documentation issue blocking R CMD check and re…
Browse files Browse the repository at this point in the history
…vert execute permission on all files

Squashed commit of the following:

commit 00171d7caa5c0eb0678401379566a722ba6ca7e7
Merge: cb9236b e0c9039
Author: Shail Choksi <shail.choksi@sciome.com>
Date:   Tue Apr 9 17:17:39 2024 -0400

    Pull request #44: Revert execute permissions on all files

    Merge in STAT/prestogp from shail-dev-2 to master

    * commit 'e0c90391f290dd2f6ebe62f6a69db8ec006c1872':
      chmod changes
      Implement imputation beta

commit e0c90391f290dd2f6ebe62f6a69db8ec006c1872
Merge: b8f91fd 05e7dfb
Author: sciome-bot <software.tools@sciome.com>
Date:   Tue Apr 9 17:16:29 2024 -0400

    Merge branch 'to-git' of ssh://sciome-bot/stat/prestogp into shail-dev-2

commit b8f91fdaa970f2eff4608cd71fdf8d7a6e79588f
Author: sciome-bot <software.tools@sciome.com>
Date:   Tue Apr 9 17:10:53 2024 -0400

    chmod changes

commit cb9236b8adab059b338ef4d06c5fc1f4e262a6d8
Merge: cae8439 218a18a
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Apr 9 17:03:10 2024 -0400

    Pull request #42: Fixed a documentation issue

    Merge in STAT/prestogp from eb-dev to master

    * commit '218a18a6cd2891c7c4975e408f7308243c11abbf':
      Fixed a documentation issue

commit 218a18a6cd2891c7c4975e408f7308243c11abbf
Author: Eric Bair <eric.bair@sciome.com>
Date:   Mon Apr 8 02:18:24 2024 -0400

    Fixed a documentation issue

commit cae8439517a38f41ff826018ce1d4719365695c1
Merge: c15c519 6bafe5c
Author: Eric Bair <eric.bair@sciome.com>
Date:   Fri Apr 5 16:38:34 2024 -0400

    Pull request #40: Imputation beta

    Merge in STAT/prestogp from eb-dev to master

    * commit '6bafe5cf9d5574074bdcb0288e4b48efb87a8840':
      Imputation beta implemented
      Updated version number

commit 6bafe5cf9d5574074bdcb0288e4b48efb87a8840
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Apr 4 00:17:45 2024 -0400

    Imputation beta implemented

commit 1f4bcc714fbd43bfbe315a61ad03120c8fbc07ae
Author: Eric Bair <eric.bair@sciome.com>
Date:   Sun Mar 17 16:36:13 2024 -0400

    Updated version number

commit c15c519e6a81e7b899090e500cc278c795548ac2
Merge: 350b236 bab8357
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:25:12 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit 350b236ba0b77dfc5056e9e53b00f05cbb1cc4d0
Merge: 55c0e8e 95fef8c
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:24:34 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit bab8357d1f3cdc45ab38110355cc6d106dba8440
Merge: 55c0e8e 5394772
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:19:24 2024 -0500

    Pull request #38: Removed vignette, fixed lint issues

    Merge in STAT/prestogp from eb-dev to master

    * commit '53947729624b47fa1920ef39bd23d86f6e5cd7b7':
      Removed vignette, fixed lint issues

commit 55c0e8e5ed2e189876c39d9e2337b51020b6505b
Merge: 7e330f3 076c0a1
Author: sciome-bot <software.tools@sciome.com>
Date:   Thu Feb 8 14:18:48 2024 -0500

    Merge branch 'main-sciome' of sciome-bot-git:Spatiotemporal-Exposures-and-Toxicology/PrestoGP

commit 53947729624b47fa1920ef39bd23d86f6e5cd7b7
Merge: b431df4 7e330f3
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 14:07:54 2024 -0500

    Resolved merge conflict

commit b431df45c0f80a54451536033c355b47620f3077
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 8 13:56:38 2024 -0500

    Removed vignette, fixed lint issues

commit 7e330f30a659c579a3f291bc65c7918b9859c619
Merge: 13a6f44 f49d076
Author: sciome-bot <software.tools@sciome.com>
Date:   Wed Feb 7 23:25:05 2024 -0500

    Merge branch 'master' of ssh://sciome-bot/stat/prestogp

commit f49d0769a892df5dd711a2f8ebe08a3f9ca7af7b
Merge: 439790c 59baf72
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Feb 7 23:19:54 2024 -0500

    Pull request #35: Eb dev

    Merge in STAT/prestogp from eb-dev to master

    * commit '59baf720737abe59a04c98705c950ef1c7b63321':
      Fixed some documentation issues
      Removed C++11 compiler flag
      Added RandomFields data sets to PrestoGP
      Added knitr to Suggests in DESCRIPTION
      Documentation, R-cmd-check fixes, binomial regression

commit 59baf720737abe59a04c98705c950ef1c7b63321
Author: Eric Bair <eric.bair@sciome.com>
Date:   Tue Feb 6 17:49:48 2024 -0500

    Fixed some documentation issues

commit d857d8b367e3b46581677c4925ba8617f462c4d5
Author: Eric Bair <eric.bair@sciome.com>
Date:   Thu Feb 1 02:16:44 2024 -0500

    Removed C++11 compiler flag

commit 662907d9e98a20ad06602c0dfe7e81b6390e3485
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 15:36:37 2024 -0500

    Added RandomFields data sets to PrestoGP

commit cf2aadb50ecebd9e2f4401493da6901f10ee993a
Author: Eric Bair <eric.bair@sciome.com>
Date:   Wed Jan 31 13:40:24 2024 -0500

    Added knitr to Suggests in DESCRIPTION

... and 35 more commits
  • Loading branch information
shail-choksi committed Apr 9, 2024
1 parent 05e7dfb commit 6c79863
Show file tree
Hide file tree
Showing 60 changed files with 14 additions and 1 deletion.
Empty file modified .Rbuildignore
100755 → 100644
Empty file.
Empty file modified .gitignore
100755 → 100644
Empty file.
2 changes: 1 addition & 1 deletion DESCRIPTION
100755 → 100644
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Package: PrestoGP
Type: Package
Title: Penalized Regression for Spatio-Temporal Outcomes via Gaussian Processes
Version: 0.2.0.9028
Version: 0.2.0.9029
Authors@R: c(
person(given = "Eric",
family = "Bair",
Expand Down
Empty file modified Makefile
100755 → 100644
Empty file.
Empty file modified NAMESPACE
100755 → 100644
Empty file.
Empty file modified R/Log_Likelihood.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP-package.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_CreateU_Multivariate.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_Full.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_Model.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_Multivariate_Vecchia.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_Util_Functions.R
100755 → 100644
Empty file.
Empty file modified R/PrestoGP_Vecchia.R
100755 → 100644
Empty file.
Empty file modified R/datadocs.R
100755 → 100644
Empty file.
Empty file modified README.md
100755 → 100644
Empty file.
Empty file modified data/soil.rda
100755 → 100644
Empty file.
Empty file modified data/weather.rda
100755 → 100644
Empty file.
Empty file modified examples/Analysis_NO2.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations_Nugget_Sill_Ratio.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations_Spatial_Range.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations_Temporal_Range.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations_Total_Variance.R
100755 → 100644
Empty file.
Empty file modified examples/Analysis_Simulations_Vecchia_Convergence.R
100755 → 100644
Empty file.
Empty file modified examples/Multivariate_Example.R
100755 → 100644
Empty file.
Empty file modified examples/Multivariate_Spatial.R
100755 → 100644
Empty file.
Empty file modified examples/Multivariate_Spatial_multiple_outcomes.R
100755 → 100644
Empty file.
Empty file modified examples/Multivariate_multiple_outcomes.R
100755 → 100644
Empty file.
Empty file modified examples/Simple_Example.R
100755 → 100644
Empty file.
Empty file modified examples/Simple_Example_Full.R
100755 → 100644
Empty file.
Empty file modified examples/Simple_Spatial.R
100755 → 100644
Empty file.
Empty file modified examples/Simple_Spatial_Full.R
100755 → 100644
Empty file.
Empty file modified man/.Rhistory
100755 → 100644
Empty file.
Empty file modified man/figures/prestoGP-logo.png
100755 → 100644
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
13 changes: 13 additions & 0 deletions man/prestogp_fit-PrestoGPModel-method.Rd
100755 → 100644

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

Empty file modified src/Makevars
100755 → 100644
Empty file.
Empty file modified src/Makevars.win
100755 → 100644
Empty file.
Empty file modified src/createUMC.cpp
100755 → 100644
Empty file.
Empty file modified tests/testthat.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/covlist.rds
100755 → 100644
Empty file.
Empty file modified tests/testthat/covmat.rds
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_big.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_big.RData
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_big_pred.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_big_st.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_lik.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_small.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_multivariate_small_pred.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia.RData
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia_pred.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia_small.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia_small_pred.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/sim_vecchia_st.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/test-Log_Likelihood.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/test-PrestoGP_CreateU_Multivariate.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/test-PrestoGP_Model.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/test-PrestoGP_Multivariate_Vecchia_Model.R
100755 → 100644
Empty file.
Empty file modified tests/testthat/test-PrestoGP_Univariate.R
100755 → 100644
Empty file.

0 comments on commit 6c79863

Please sign in to comment.