Pull request #20: R CMD check fixes

Merge in STAT/prestogp from build-workflow to master

* commit '8dac09511058405d630121ca13c589781c932bf4':
  R CMD check fixes
  Add new files to Collate section in DESCRIPTION file

.Rbuildignore

@@ -5,3 +5,4 @@
 ^\.Rproj\.user$
 ^doc$
 ^Meta$
+^\.github/

.gitignore

@@ -31,6 +31,7 @@ manuscript/
 
 # Output files from R CMD build
 /*.tar.gz
+*.dll
 
 # Output files from R CMD check
 /*.Rcheck/

DESCRIPTION

@@ -36,22 +36,23 @@ Imports:
     knitr,
     dplyr,
     glmnet,
-    rmarkdown,
-    markdown,
     gtools,
     geoR,
-    doParallel,
     RANN,
-    rlang (>= 0.4.11),
-    foreach,
     stats,
-    methods
+    methods,
+    foreach,
+    rlang,
+    mvtnorm,
+    spam,
+    psych
 License: GPL-3
 Encoding: UTF-8
 VignetteBuilder: knitr 
 RoxygenNote: 7.2.3
 Collate: 
     'Log_Likelihood.R'
+    'PrestoGP-package.R'
     'PrestoGP_CreateU_Multivariate.R'
     'PrestoGP_Model.R'
     'PrestoGP_Vecchia_Spatiotemporal.R'
@@ -63,6 +64,7 @@ Collate:
     'RcppExports.R'
     'Visualization.R'
     'package.R'
+    'utils-tidy-eval.R'
 Suggests: 
     roxygen2,
     testthat (>= 3.0.0)

NAMESPACE

@@ -1,5 +1,7 @@
 # Generated by roxygen2: do not edit by hand
 
+export(":=")
+export(.data)
 export(FullSpatialModel)
 export(Kr_pred)
 export(MultivariateVecchiaModel)
@@ -8,7 +10,11 @@ export(ST_Krig_Param_Avg)
 export(SpatialModel)
 export(SpatiotemporalFullModel)
 export(SpatiotemporalModel)
+export(as_label)
+export(as_name)
 export(createUMultivariate)
+export(enquo)
+export(enquos)
 export(negloglik.full)
 export(negloglik_full_ST)
 export(negloglik_vecchia)
@@ -27,6 +33,18 @@ import(readxl)
 import(scoringRules)
 importFrom(aod,wald.test)
 importFrom(dplyr,"%>%")
+importFrom(foreach,"%dopar%")
+importFrom(foreach,foreach)
+importFrom(methods,callNextMethod)
+importFrom(methods,new)
+importFrom(methods,validObject)
+importFrom(rlang,":=")
+importFrom(rlang,.data)
+importFrom(rlang,as_label)
+importFrom(rlang,as_name)
+importFrom(rlang,enquo)
+importFrom(rlang,enquos)
+importFrom(stats,coef)
 importFrom(stats,optim)
 importFrom(stats,predict)
 importFrom(stats,var)

R/PrestoGP_Model.R

@@ -460,7 +460,7 @@ setMethod(
       }
 
       model <- transform_data(model, model@Y_train, model@X_train)
-      model <- estimate_betas(model, parallel, foldid)
+      model <- estimate_betas(model, parallel)
       min.error <- compute_error(model)
       ### Check min-error against the previous error and tolerance
       if (min.error < prev.error * tol) {