WIP update OpenBlas #21
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| name: test-mkl-ubuntu-latest | |
| on: | |
| push: | |
| branches: | |
| - intel-mkl-action | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| C_INCLUDE_PATH: "$C_INCLUDE_PATH:/opt/OpenBLAS/include" | |
| CPATH: "$CPATH:/opt/OpenBLAS/include" | |
| LIBRARY_PATH: "$LIBRARY_PATH:/opt/OpenBLAS/lib" | |
| LD_LIBRARY_PATH: "$LD_LIBRARY_PATH:/opt/OpenBLAS/lib" | |
| OPENBLAS_DIR: "/opt/OpenBLAS" | |
| USE_THREAD: 1 | |
| NUM_THREADS: 64 | |
| DYNAMIC_ARCH: 0 | |
| NO_WARMUP: 1 | |
| BUILD_RELAPACK: 0 | |
| COMMON_OPT: "-O2 -march=native" | |
| CFLAGS: "-O2 -march=native" | |
| FCOMMON_OPT: "-O2 -march=native" | |
| FCFLAGS: "-O2 -march=native" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| steps: | |
| - name: Print CPU info | |
| shell: bash | |
| run: | | |
| lscpu | |
| # - name: add oneAPI to apt | |
| # shell: bash | |
| # run: | | |
| # cd /tmp | |
| # wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| # sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| # rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| # sudo add-apt-repository "deb https://apt.repos.intel.com/oneapi all main" | |
| - name: Clone latest OpenBLAS | |
| shell: bash | |
| run: | | |
| git clone https://github.com/xianyi/OpenBLAS.git | |
| cd OpenBLAS | |
| git checkout v0.3.26 | |
| sudo mkdir $OPENBLAS_DIR | |
| make -j DYNAMIC_ARCH=0 CC=gcc FC=gfortran HOSTCC=gcc BINARY=64 INTERFACE=64 LIBNAMESUFFIX=threaded | |
| sudo make PREFIX=$OPENBLAS_DIR LIBNAMESUFFIX=threaded install | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| any::microbenchmark | |
| - name: Check R sessionInfo | |
| shell: Rscript {0} | |
| run: | | |
| sessionInfo() | |
| # - name: check R performance | |
| # shell: Rscript {0} | |
| # run: | | |
| # library(microbenchmark) | |
| # microbenchmark( | |
| # rnorm(1000000), | |
| # times = 10000 | |
| # ) | |
| # - name: install oneAPI MKL library | |
| # shell: bash | |
| # run: | | |
| # sudo apt install intel-mkl libmkl-dev | |
| # - name: Update Alternatives | |
| # shell: bash | |
| # run: | | |
| # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas64.so libblas64.so-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 libblas64.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| # # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so liblapack64.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| - name: Update Alternatives | |
| shell: bash | |
| run: | | |
| # sudo ls -al /opt/OpenBLAS/lib | |
| # sudo ls -al /opt/OpenBLAS/include | |
| sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas64.so libblas64.so-x86_64-linux-gnu /opt/OpenBLAS/lib/libopenblas_threaded_zenp-r0.3.26.so 150 | |
| # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas64.so libblas64.so-x86_64-linux-gnu /opt/OpenBLAS/lib/libopenblas_threaded_zenp-r0.3.26.so 150 | |
| # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas64.so libblas64.so-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 libblas64.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| # # sudo update-alternatives --install /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so liblapack64.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libmkl_rt.so 150 | |
| - name: Update Dynamic Linker | |
| shell: bash | |
| run: | | |
| sudo ldconfig | |
| - name: Check R sessionInfo | |
| shell: Rscript {0} | |
| run: | | |
| sessionInfo() | |
| # - name: check R performance after latest OpenBlas | |
| # shell: Rscript {0} | |
| # run: | | |
| # library(microbenchmark) | |
| # microbenchmark( | |
| # rnorm(1000000), | |
| # times = 10000 | |
| # ) | |
| # update-alternatives: using /usr/lib/x86_64-linux-gnu/libmkl_rt.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode | |
| # update-alternatives: using /usr/lib/x86_64-linux-gnu/libmkl_rt.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode | |
| # update-alternatives: using /usr/lib/x86_64-linux-gnu/libmkl_rt.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode | |
| # update-alternatives: using /usr/lib/x86_64-linux-gnu/libmkl_rt.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode | |
| # Matrix products: default | |
| # BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 | |
| # LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0 |