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Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

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Marsilea-viz/marsilea

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Shows a bar chart with benchmark results.

Documentation Status pypi version Conda Version PyPI - License

Marsilea: Declarative creation of composable visualization!


Documentation

You can read the documentation on Read the Docs.

Read Documentation

Installation

Using PIP

pip install marsilea

Using Conda/Mamba

conda install -c conda-forge marsilea
# or
mamba install -c conda-forge marsilea

What is Composable Visualization?

Shows a bar chart with benchmark results.

When we do visualization, we often need to combine multiple plots to show different aspects of the data. For example, we may need to create a heatmap to show the expression of genes in different cells, and then create a bar chart to show the expression of genes in different cell types. A visualization contains multiple plots is called a composable visualization. In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.

Examples

Bar Chart With Image Stacked Bar Arc Diagram
Heatmap Oncoprint Upsetplot