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@MGXlab

VEO & MGX Groups

Viral Ecology and Omics Group (VEO) & Metagenomics Group (MGX)

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  1. CAT_pack CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    Python 186 30

  2. DNNGIOR DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    Python 10 3

  3. Viromics-Workshop-MGX Viromics-Workshop-MGX Public

    Python 8 3

  4. social_niche_breadth_SNB social_niche_breadth_SNB Public

    Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.

    Python 8 1

  5. CAT_dev CAT_dev Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    Python 5

  6. pvogs_function pvogs_function Public

    A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.

    Python 2

Repositories

Showing 10 of 21 repositories
  • Viromics2024 Public
    MGXlab/Viromics2024’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 17, 2024
  • Jaeger Public
    MGXlab/Jaeger’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
  • viral_ecology_pipeline Public

    viral ecology along gradient across biomes

    MGXlab/viral_ecology_pipeline’s past year of commit activity
    Python 1 0 0 0 Updated Sep 6, 2024
  • genes_synteny Public

    This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.

    MGXlab/genes_synteny’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 29, 2024
  • Graphite Public

    LMEMs in compacted colored De Bruijn graphs

    MGXlab/Graphite’s past year of commit activity
    C 2 2 0 0 Updated Aug 2, 2024
  • CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    MGXlab/CAT_pack’s past year of commit activity
    Python 186 MIT 30 40 3 Updated Jul 1, 2024
  • DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    MGXlab/DNNGIOR’s past year of commit activity
    Python 10 MIT 3 5 3 Updated Jun 27, 2024
  • subgraphs Public
    MGXlab/subgraphs’s past year of commit activity
    Rust 0 0 0 0 Updated Jun 27, 2024
  • Viromics2024-forked Public Forked from MGXlab/Viromics-Workshop-MGX
    MGXlab/Viromics2024-forked’s past year of commit activity
    Python 0 3 0 0 Updated Jun 24, 2024
  • virus_identification_tools_benchmarking Public

    virus identification tools benchmarking

    MGXlab/virus_identification_tools_benchmarking’s past year of commit activity
    Python 0 0 6 1 Updated Mar 28, 2024
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