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Uploading scripts to handle GBS data, and some R applied to Biostatistics
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Uploading scripts to handle GBS data, and some R applied to Biostatistics

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  1. VCFixer VCFixer Public

    Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).

    Perl 1

  2. VCFiles VCFiles Public

    VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already e…

    Perl 1

  3. population_genetics population_genetics Public

    Various unix and perl scripts to deal with genetics data: prepare submission files, extract results, and so. Check their "help" to see usage

    Perl 1

  4. handle_edit_files handle_edit_files Public

    Miscelaneous scripts used to handle files, columns, rename, etc

    Perl

  5. EvolEcol_Rlectures EvolEcol_Rlectures Public

    Those are some scripts I wrote for my students to teach them a little bit of R applied to biology, I'll be editing them as the course goes

    R

  6. R-analysis R-analysis Public

    Some R scripts I wrote to analyse my data.

    R