Version 2024.1.1

Released on 20 April 2024

Fixed

• Compatibility with PyCharm 2024.1
• Bundled snakemake wrappers list updated to v3.8.0
• Completion for wrapper names rarely works (see #517)

Version 2023.3.1

Released on 6 Dec 2023 (EAP on 3 Nov 2023)

Fixed

• Compatibility with PyCharm 2023.3 (see #507)

Changed:

• Bundled snakemake wrappers list updated to v2.9.1

Version 2023.2.1

Released on 27 Jul 2023

Fixed

• Compatibility with PyCharm 2023.2

Changed:

• Bundled snakemake wrappers list updated to v2.2.1

Version 2023.1.1

Released on 9 April 2023

Fixed

• Compatibility with PyCharm 2023.1 (see #505)
• Exception: "Access is allowed from write thread only" creating project in dumb mode (see #506)
• Make Snakecharm trusted plugins, even though it is provided not by JetBrains but by JetBrains Research (see #503)
• Empty What's New section fixed

Changed:

• Bundled snakemake wrappers list updated to v1.25.0
• Plugin versioning changed, now minor version is not CI build, just manual counter

Version 2022.3.771

Released on December 7th 2022

Fixed

• Compatibility with PyCharm 2022.3 #501 (see #501)

Changed:

• Bundles snakemake wrappers list updated to v1.20.0

Version 2022.2.761

Released on August 5th 2022

Fixed

• Compatibility with PyCharm 2022.2
• Ignore whitespaces that could occur after as in use block
• Bundled wrappers repo updated to v1.7.1

Added:

• [7.10.0] Support conda environment definitions to be passed as function pointers, similar to input, params, and resources #494 (see #494)
• [7.9.0] Syntax supprt for exclude keyword in use rules (see #495, #496)
• [ 7.0.0] template_engine: basic support (see #497)
  • Do not highlight template_engine as unrecognized section
  • Inspections:
    • Only one argument expected after template_engine
    • Keywords arguments not supported after template_engine
    • Do not warn about unused log section if rule with template_engine
    • template_engine is execution section, so could not be with run/shell/notebook/script
    • template_engine should be last in the rule
    • Completion for "yte", "jinja2" in template_engine string argument
    • Inspection that warns when template= keyword argument is required in section with template_engine

Version 2022.1.749

Released on June 15th 2022

Fixed

• "Snakemake support is disabled. Not all features are available" is show in non Snakemake context (see #491)
• Do not show error for conda env that looks like already existing env (see #493)

Added:

• "default_target:" directive support (see #473)
• "retries:" directive support (see #490)
• "ensure:" directive support (see #489)

Version 2022.1.743

[2022.1.743], [2021.3.744]

Released on May 4th 2022

Changed:

• Bundles snakemake wrappers list updated to v1.3.2
• [2022.1.743] Plugin for PyCharm 2022.x (see #487)
• [2021.3.744] Plugin for PyCharm 2021.3

Fixed

• Resolve/completion for checkpoints after rules keyword (see #262)
• Quick fix for unused log file inspection (see #452)
• Resolve for rule names in use rule section (see #455)
• Multiple args inspection in workdir case (see #140)
• localrules and ruleorder now take into account use rule (see #448)
• Keyword arguments highlighting (see #454)
• Resolve for rules keyword if snakemake version less than 6.1 (see #359)
• Plugin Logo Updated (see #449)
• Snakemake file type icon updated
• 'copy-minimal' shadow section missing in completion (see #467)

Added

• Inspection: warns that that all docstrings except the first one will be ignored (see #341)
• Quick fix for unresolved files (conda, configfile. etc.) (see #277)
• Gutter icons for rule inheritance (see #429)
• Warning: Snakemake support is disabled (see #109)

Version 2021.3.661

[2021.3.661]

Released on December 7th 2021

Changed

• PyCharm 2021.3 compatibility (see #444)
• Show argument preview for int indexes completion in output[i] (see #378)
• Allocation of all top-level sections into one token and support for unknown top-level sections (see #373)

Fixed

• Resolve and completion for 'script' section (see #426)
• Only snakemake file can't end with a comment (see #365)
• SmkSectionDuplicatedArgsInspection now checks workflow top-level sections (see #407)
• All inspections warnings now can be overridden (see #423)
• Completion for .smk files in module 'snakefile' section (see #428)
• Default path "config/config.yaml" now supported (see #363)
• Access by index to input/output sections with 'multiext' function (see #278)
• Inspection: Do not show warning that rule section is unused variable if rule is defined in method (see #385)
• SOE: From UnusedLocal inspection for SnakemakeSL expression (see #380)
• Do not show syntax error for rule w/o body (see #420)

Added

• Color Settings Page (see #431)
• Inspection: highlights 'use rule' section which overrides several rules as one (see #411)
• Collecting wildcards from overridden rules in 'use' sections (see #418)
• Weak warnings for unused 'log' sections in 'use rule' (see #414)
• Weak warnings for unused 'log' sections (see #300)
• Support for 'module' and 'use' keywords (see #355)
• Inspection for improperly called functions (see #148)
• Ability for memorising new section name (see #372)
• Support for 'handover' section (see #362)
• Support for 'containerized' section (see #361)
• Inspection: Show ERROR for execution sections in 'use' section (see #408)
• Completion features related to 'use' section (see #413)
• Add reference for 'snakefile:' in module declaration (see #409)
• Initial PEPs support (see #360)

Version 2021.2.657

[2021.2.657]

Released on December 6th 2021

Changed

• Show argument preview for int indexes completion in output[i] (see #378)
• Allocation of all top-level sections into one token and support for unknown top-level sections (see #373)

Fixed

• Resolve and completion for 'script' section (see #426)
• Only snakemake file can't end with a comment (see #365)
• SmkSectionDuplicatedArgsInspection now checks workflow top-level sections (see #407)
• All inspections warnings now can be overridden (see #423)
• Completion for .smk files in module 'snakefile' section (see #428)
• Default path "config/config.yaml" now supported (see #363)
• Access by index to input/output sections with 'multiext' function (see #278)
• Inspection: Do not show warning that rule section is unused variable if rule is defined in method (see #385)
• SOE: From UnusedLocal inspection for SnakemakeSL expression (see #380)
• Do not show syntax error for rule w/o body (see #420)

Added

• Color Settings Page (see #431)
• Inspection: highlights 'use rule' section which overrides several rules as one (see #411)
• Collecting wildcards from overridden rules in 'use' sections (see #418)
• Weak warnings for unused 'log' sections in 'use rule' (see #414)
• Weak warnings for unused 'log' sections (see #300)
• Support for 'module' and 'use' keywords (see #355)
• Inspection for improperly called functions (see #148)
• Ability for memorising new section name (see #372)
• Support for 'handover' section (see #362)
• Support for 'containerized' section (see #361)
• Inspection: Show ERROR for execution sections in 'use' section (see #408)
• Completion features related to 'use' section (see #413)
• Add reference for 'snakefile:' in module declaration (see #409)
• Initial PEPs support (see #360)