Skip to content

Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.

License

Notifications You must be signed in to change notification settings

JervenBolleman/handlegraph4jGFA

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

18 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

handlegraph4j gfaXreader

This is a GFA1 parser (assuming only ascii 7-bit input or UTF-8 with all code points being less than 128).

The code at this point does not support:

  • C lines
  • Any optional field
  • H line contents

There is a skeleton code for GFA2 but nothing practical is written down yet code wise.

Contributions here are super welcome!

Usage Instructions

Build as usual with maven

mvn install

May need a local checkout of handlegraph4j as well.

Copyright/License

See LICENSE.md

About

Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages