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Computational Protein Design
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Computational Protein Design

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  1. pmUE pmUE Public

    pmUE (Protein Modelling Unreal Engine) - a repo for constructing a molecule visualizer plugin in Unreal

    C++ 6 3

  2. InfluenceFunctional/E2EDNA2 InfluenceFunctional/E2EDNA2 Public

    Python 3 2

  3. ProjectEuler100 ProjectEuler100 Public

    My attempts at problems 1-100 from the Project Euler Archives (projecteuler.net)

    Python

  4. Matplotlib plot with LaTeX (Computer... Matplotlib plot with LaTeX (Computer Modern) font
    1
    import matplotlib.pyplot as plt
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    3
    plt.style.use('seaborn') # I personally prefer seaborn for the graph style, but you may choose whichever you want.
    4
    params = {"ytick.color" : "black",
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              "xtick.color" : "black",
  5. Residue dictionaries for one-letter ... Residue dictionaries for one-letter and three-letter amino acid names
    1
    resdict = {"ALA": "A","CYS": "C","ASP": "D","GLU": "E","PHE": "F","GLY": "G","HIS": "H","ILE": "I","LYS": "K","LEU": "L","MET": "M","ASN": "N","PRO": "P","GLN": "Q","ARG": "R","SER": "S","THR": "T","VAL": "V","TRP": "W","TYR": "Y"}
    2
    resdict_inv = {one_let: three_let for three_let, one_let in resdict.items()}
  6. build_dimer public version (includes... build_dimer public version (includes BioPython, PeptideBuilder dependencies)
    1
    # %%file build_dimer.py
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    import os
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    from PeptideBuilder import Geometry
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    import PeptideBuilder
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    import Bio.PDB