Python level access to query expression language (#769)

* moving query to own module * new function * adding doctests * docs * Adding notebook example * adding dissector * refactor * format * Allow passing of terms on CLI for ontology-only enrichment, fixes #769 Additional changes for #769 * Fixes #770 * fix codespell. See #756 * null * fmt * do not apply word normalization * docs
INCATools · Jun 1, 2024 · d56db0e · d56db0e
1 parent 19ae9d8
commit d56db0e
Show file tree

Hide file tree

Showing 14 changed files with 2,091 additions and 391 deletions.
diff --git a/notebooks/CellType/LungEpithelialCell.ipynb b/notebooks/CellType/LungEpithelialCell.ipynb
diff --git a/notebooks/images/lung-cells-src.png b/notebooks/images/lung-cells-src.png
diff --git a/src/oaklib/__init__.py b/src/oaklib/__init__.py
@@ -6,6 +6,7 @@
 __version__ = "0.1.0"
 
 from oaklib.interfaces import BasicOntologyInterface  # noqa:F401
+from oaklib.query import onto_query  # noqa:F401  # noqa:F401
 from oaklib.resource import OntologyResource  # noqa:F401
 from oaklib.selector import get_adapter, get_implementation_from_shorthand  # noqa:F401