Requirements fix

More streamlined installation of requirements along with using versions of dkpro-cassis and stomp.py that have had long term success with ctakes-pbj

v0.1.0

Python side has better names for everything to more closely reflect the Java/UIMA side. Using static methods in timelines_annotator.py to make the file easier to read and not unnecessarily expose those methods

v0.0.1

Added blank patient output logic for new scoring method, other minor fixes

v0.0.0

Initial minimal working example, some known issues currently being fixed