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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test and Coverage (Ubuntu) | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system libraries | |
| run: | | |
| sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-key 612DEFB798507F25 | |
| sudo add-apt-repository -y "https://downloads.skewed.de/apt jammy main" | |
| sudo apt-get install -y python3-pip libcairo2-dev python3-graph-tool | |
| sudo apt-get install -y libgmp3-dev libmpfr-dev libmpc-dev wget bzip2 build-essential libxcursor-dev libglib2.0-dev | |
| # sudo apt-get install -y libgmp3-dev | |
| # sudo apt-get install -y libmpfr-dev | |
| # sudo apt-get install -y libmpc-dev | |
| # sudo apt-get install -y graph-tool | |
| - name: Install pip dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -r requirements_optional.txt | |
| pip install . | |
| python -m pip install flake8 pytest | |
| pip install shuffle_graph>=2.1.0 similarity-index-of-label-graph>=2.0.1 ASLPAw>=2.1.0 | |
| pip install pytest pytest-cov | |
| pip install coveralls | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov-config=.coveragerc --cov=./ --cov-report=xml | |
| - name: codecov | |
| uses: codecov/codecov-action@v1 |